Variant report

Variant	rs708022
Chromosome Location	chr6:37617519-37617520
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37617185..37618953-chr6:37619629..37621239,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10807186	0.96[ASN][1000 genomes]
rs13198513	0.96[ASN][1000 genomes]
rs13199974	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13203140	0.92[ASN][1000 genomes]
rs13204070	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212859	0.96[ASN][1000 genomes]
rs1738456	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883899	0.92[ASN][1000 genomes]
rs1883900	0.92[ASN][1000 genomes]
rs2273109	0.98[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2273110	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846873	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3846874	0.96[ASN][1000 genomes]
rs3846876	0.96[ASN][1000 genomes]
rs3846879	0.92[ASN][1000 genomes]
rs3857567	0.88[ASN][1000 genomes]
rs3857568	0.96[ASN][1000 genomes]
rs3857571	0.92[ASN][1000 genomes]
rs4236056	0.96[ASN][1000 genomes]
rs4357132	0.92[ASN][1000 genomes]
rs4711509	0.94[ASN][1000 genomes]
rs6906090	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930085	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs708020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs708021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7452633	0.96[ASN][1000 genomes]
rs7452676	0.96[ASN][1000 genomes]
rs7452692	0.96[ASN][1000 genomes]
rs761413	0.83[ASN][1000 genomes]
rs7775837	0.96[ASN][1000 genomes]
rs804816	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs804817	0.99[ASN][1000 genomes]
rs813079	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9366945	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9369015	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394447	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462343	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv10458	chr6:37616371-37618598	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37599200-37621800	Weak transcription	NHLF	lung
2	chr6:37612600-37619800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:37614200-37621800	Weak transcription	Aorta	Aorta
4	chr6:37616000-37618000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
5	chr6:37616000-37618200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:37616000-37618400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr6:37616200-37618200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:37616200-37618200	Enhancers	Pancreas	Pancrea
9	chr6:37616400-37618000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
10	chr6:37616400-37618200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:37616400-37618200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr6:37616800-37617600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
13	chr6:37616800-37619600	Weak transcription	Brain Substantia Nigra	brain
14	chr6:37617000-37617800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:37617000-37617800	Weak transcription	Liver	Liver
16	chr6:37617000-37617800	Enhancers	Gastric	stomach
17	chr6:37617000-37618000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:37617000-37618400	Bivalent Enhancer	Fetal Brain Male	brain
19	chr6:37617000-37620200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:37617200-37617600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
21	chr6:37617200-37617600	Bivalent Enhancer	Fetal Brain Female	brain
22	chr6:37617200-37617800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
23	chr6:37617200-37619600	Weak transcription	Brain Anterior Caudate	brain
24	chr6:37617200-37619600	Weak transcription	Ovary	ovary
25	chr6:37617200-37619600	Weak transcription	Right Atrium	heart
26	chr6:37617200-37621600	Weak transcription	Esophagus	oesophagus
27	chr6:37617200-37622400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:37617400-37617600	Bivalent Enhancer	Primary T cells from cord blood	blood
29	chr6:37617400-37617800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
30	chr6:37617400-37617800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
31	chr6:37617400-37617800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:37617400-37617800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:37617400-37617800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
34	chr6:37617400-37618800	Bivalent Enhancer	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links