Variant report

Variant	rs7080410
Chromosome Location	chr10:58346199-58346200
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11816946	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11819569	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12762874	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs17577793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17584858	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17585827	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17662349	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs1878626	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2069164	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2172410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2893693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35089078	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72804912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72804913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72804916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72804920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72804932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72804962	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72804967	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72804993	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72804994	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72804996	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7475658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7895615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7904526	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7918328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752691	chr10:57738694-58541894	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1041942	chr10:58290439-58451787	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540647	chr10:58290439-58451787	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv517747	chr10:58296224-58473735	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1037949	chr10:58300798-58354925	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1036583	chr10:58326465-58482756	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1037820	chr10:58328507-58480790	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1045583	chr10:58328507-58482756	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1054652	chr10:58328507-58485001	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv2760127	chr10:58328519-58485013	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv551063	chr10:58329209-58473735	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1037340	chr10:58329209-58480790	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1054588	chr10:58329209-58482756	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1054062	chr10:58329209-58485001	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv1043534	chr10:58330520-58480790	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv1047489	chr10:58330520-58482756	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv1045015	chr10:58334902-58482756	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv1047726	chr10:58334902-58485001	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv1048186	chr10:58343941-58475146	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv540648	chr10:58343941-58475146	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv1039709	chr10:58343941-58522183	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv540649	chr10:58343941-58522183	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58343600-58346200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:58344000-58346200	Weak transcription	NHEK	skin
3	chr10:58345400-58346200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:58345400-58347200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:58345600-58346200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:58345600-58346400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:58345600-58346400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:58345600-58346400	Enhancers	Left Ventricle	heart
9	chr10:58345600-58346400	Enhancers	Right Ventricle	heart
10	chr10:58345600-58346600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:58345600-58346600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:58345600-58346600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:58345600-58347200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr10:58345800-58346400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:58345800-58346400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:58345800-58346400	Enhancers	Esophagus	oesophagus
17	chr10:58345800-58346400	Enhancers	Fetal Brain Female	brain
18	chr10:58345800-58346600	Enhancers	Fetal Brain Male	brain
19	chr10:58345800-58346800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:58346000-58346200	Enhancers	Lung	lung
21	chr10:58346000-58346600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr10:58346000-58346800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr10:58346000-58346800	Enhancers	Fetal Heart	heart
24	chr10:58346000-58346800	Enhancers	HMEC	breast
25	chr10:58346000-58347000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr10:58346000-58347400	Enhancers	HUES48 Cell Line	embryonic stem cell

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