Variant report

Variant	rs7080876
Chromosome Location	chr10:99362598-99362599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11818759	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99349600-99370800	Weak transcription	Fetal Stomach	stomach
2	chr10:99351600-99375600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:99356400-99373800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:99356800-99366200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:99357000-99366200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:99357800-99367000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:99357800-99367000	Weak transcription	Right Atrium	heart
8	chr10:99358200-99362800	Strong transcription	Liver	Liver
9	chr10:99358800-99371200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:99359000-99368400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:99359200-99375600	Weak transcription	Pancreas	Pancrea
12	chr10:99359400-99375600	Weak transcription	Fetal Intestine Large	intestine
13	chr10:99359600-99370000	Weak transcription	Right Ventricle	heart
14	chr10:99360000-99366800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:99361400-99362600	Enhancers	A549	lung
16	chr10:99361800-99362800	Enhancers	Psoas Muscle	Psoas
17	chr10:99361800-99366800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:99361800-99367000	Weak transcription	Left Ventricle	heart
19	chr10:99361800-99369200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:99361800-99370800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:99361800-99371000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:99361800-99371400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr10:99361800-99374400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:99361800-99375600	Weak transcription	Brain Substantia Nigra	brain
25	chr10:99361800-99392200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:99362000-99362600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:99362000-99362600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:99362000-99368600	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:99362200-99362600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr10:99362400-99366200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:99362400-99370000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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