Variant report

Variant	rs7081271
Chromosome Location	chr10:18872699-18872700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18871041..18872755-chr10:18938799..18941399,2	K562	blood:
2	chr10:18872028..18874928-chr10:18946049..18948722,4	K562	blood:

Variant related genes	Relation type
ENSG00000165997	Chromatin interaction
ENSG00000241058	Chromatin interaction
ENSG00000152487	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1027194	0.86[ASN][1000 genomes]
rs10741120	1.00[ASN][1000 genomes]
rs10764584	1.00[CHD][hapmap]
rs10828834	0.82[GIH][hapmap]
rs10828879	1.00[CHD][hapmap]
rs10828906	1.00[CHD][hapmap]
rs10829156	1.00[CHD][hapmap];0.82[GIH][hapmap]
rs6482516	1.00[CHD][hapmap]
rs7095666	1.00[CHD][hapmap];0.82[GIH][hapmap]
rs7910506	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7923072	1.00[CHD][hapmap];0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1793653	chr10:18827828-18888369	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1794817	chr10:18827828-18888369	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv1811259	chr10:18827828-18888369	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv1840241	chr10:18827828-18888369	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv1841068	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv1851495	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv1835982	chr10:18833550-18872699	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv1845973	chr10:18841795-18872699	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv1793359	chr10:18841795-18872872	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv1801825	chr10:18853581-18872699	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7081271	VIM	cis	cerebellum	SCAN
rs7081271	NSUN6	cis	cerebellum	SCAN
rs7081271	VIM	cis	parietal	SCAN

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:18861000-18883200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:18862200-18894600	Weak transcription	HSMM	muscle
7	chr10:18862400-18878400	Strong transcription	Liver	Liver
8	chr10:18862600-18876600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:18863000-18894600	Weak transcription	A549	lung
10	chr10:18863000-18910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:18863200-18876400	Weak transcription	Spleen	Spleen
12	chr10:18863600-18875200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:18863800-18902200	Weak transcription	Brain Anterior Caudate	brain
14	chr10:18864800-18898000	Weak transcription	Fetal Kidney	kidney
15	chr10:18865600-18885000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:18866600-18899400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:18867400-18875200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:18867400-18876800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:18867400-18877400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:18867600-18894400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:18867600-18899600	Weak transcription	Placenta	Placenta
22	chr10:18867800-18872800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:18867800-18874400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:18867800-18878200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:18867800-18900400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:18867800-18916400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:18868000-18896400	Weak transcription	NHEK	skin
28	chr10:18868000-18902200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:18868000-18916200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:18868200-18876800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:18868200-18896600	Weak transcription	Small Intestine	intestine
32	chr10:18868200-18904800	Weak transcription	HSMMtube	muscle
33	chr10:18868400-18879200	Weak transcription	Stomach Mucosa	stomach
34	chr10:18868600-18873400	Strong transcription	Fetal Muscle Trunk	muscle
35	chr10:18868800-18896600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:18869000-18873000	Weak transcription	Fetal Lung	lung
37	chr10:18869200-18877000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr10:18869400-18873400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:18869800-18874000	Strong transcription	Fetal Brain Female	brain
40	chr10:18869800-18875400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr10:18869800-18910800	Weak transcription	Right Ventricle	heart
42	chr10:18870000-18873400	Genic enhancers	Dnd41	blood
43	chr10:18870000-18884000	Weak transcription	Aorta	Aorta
44	chr10:18870200-18874600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:18870200-18875200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:18870200-18875200	Weak transcription	Esophagus	oesophagus
47	chr10:18870200-18876400	Weak transcription	Pancreas	Pancrea
48	chr10:18870200-18892000	Weak transcription	HepG2	liver
49	chr10:18870200-18900600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:18870400-18876000	Weak transcription	Monocytes-CD14+_RO01746	blood

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