Variant report

Variant	rs7082529
Chromosome Location	chr10:4953435-4953436
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4952930..4955597-chr10:4957156..4959069,3	K562	blood:
2	chr10:4947891..4950201-chr10:4952537..4954922,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs12360475	1.00[AFR][1000 genomes]
rs12569410	1.00[AFR][1000 genomes]
rs12569715	1.00[AFR][1000 genomes]
rs12569839	1.00[AFR][1000 genomes]
rs12570011	1.00[AFR][1000 genomes]
rs12570641	1.00[AFR][1000 genomes]
rs12571065	1.00[AFR][1000 genomes]
rs12571192	1.00[AFR][1000 genomes]
rs12571212	1.00[AFR][1000 genomes]
rs12571691	1.00[AFR][1000 genomes]
rs12571940	1.00[AFR][1000 genomes]
rs12571967	1.00[AFR][1000 genomes]
rs12571976	1.00[AFR][1000 genomes]
rs12571980	1.00[AFR][1000 genomes]
rs12572008	1.00[AFR][1000 genomes]
rs12572181	1.00[AFR][1000 genomes]
rs12572395	1.00[AFR][1000 genomes]
rs12572449	1.00[AFR][1000 genomes]
rs12573010	1.00[AFR][1000 genomes]
rs12573159	1.00[AFR][1000 genomes]
rs12573197	1.00[AFR][1000 genomes]
rs12573397	1.00[AFR][1000 genomes]
rs12573398	1.00[AFR][1000 genomes]
rs12573501	1.00[AFR][1000 genomes]
rs12573669	1.00[AFR][1000 genomes]
rs12573690	1.00[AFR][1000 genomes]
rs17133680	1.00[AFR][1000 genomes]
rs17133691	1.00[AFR][1000 genomes]
rs17133693	1.00[AFR][1000 genomes]
rs17133697	1.00[AFR][1000 genomes]
rs17133705	1.00[AFR][1000 genomes]
rs17133707	1.00[AFR][1000 genomes]
rs17133710	1.00[AFR][1000 genomes]
rs17133724	1.00[AFR][1000 genomes]
rs17133747	1.00[AFR][1000 genomes]
rs17133748	1.00[AFR][1000 genomes]
rs17133751	1.00[AFR][1000 genomes]
rs17133752	1.00[AFR][1000 genomes]
rs17133753	1.00[AFR][1000 genomes]
rs17133759	1.00[AFR][1000 genomes]
rs17133762	1.00[AFR][1000 genomes]
rs17133779	1.00[AFR][1000 genomes]
rs17133780	1.00[AFR][1000 genomes]
rs17133791	1.00[AFR][1000 genomes]
rs17133794	1.00[AFR][1000 genomes]
rs17133796	1.00[AFR][1000 genomes]
rs1869214	1.00[AFR][1000 genomes]
rs1869215	1.00[AFR][1000 genomes]
rs1869216	1.00[AFR][1000 genomes]
rs1869217	1.00[AFR][1000 genomes]
rs1869219	1.00[AFR][1000 genomes]
rs1869220	1.00[AFR][1000 genomes]
rs1901642	1.00[AFR][1000 genomes]
rs1993182	1.00[AFR][1000 genomes]
rs2278869	1.00[AFR][1000 genomes]
rs2290348	1.00[AFR][1000 genomes]
rs2290349	1.00[AFR][1000 genomes]
rs2290350	1.00[AFR][1000 genomes]
rs2397982	1.00[AFR][1000 genomes]
rs2397983	1.00[AFR][1000 genomes]
rs2397985	1.00[AFR][1000 genomes]
rs2397986	1.00[AFR][1000 genomes]
rs34882719	1.00[AFR][1000 genomes]
rs35340010	1.00[AFR][1000 genomes]
rs3750737	1.00[AFR][1000 genomes]
rs3750738	1.00[AFR][1000 genomes]
rs3750739	1.00[AFR][1000 genomes]
rs3750740	1.00[AFR][1000 genomes]
rs41289263	1.00[AFR][1000 genomes]
rs4339941	1.00[AFR][1000 genomes]
rs4397733	1.00[AFR][1000 genomes]
rs4480435	1.00[AFR][1000 genomes]
rs4518987	1.00[AFR][1000 genomes]
rs4593903	1.00[AFR][1000 genomes]
rs7086737	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1045155	chr10:4872239-5211318	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040343	chr10:4872814-5196815	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540462	chr10:4872814-5196815	Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv869470	chr10:4878904-5203685	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv466713	chr10:4901798-5319679	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv549881	chr10:4901798-5319679	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
10	nsv1042940	chr10:4916614-4974581	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1050246	chr10:4927428-5211318	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv894793	chr10:4935482-4988818	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv549882	chr10:4943518-5203864	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4918400-4968000	Weak transcription	Primary T cells from cord blood	blood
2	chr10:4944400-4955200	Weak transcription	Aorta	Aorta
3	chr10:4944800-4956400	Weak transcription	A549	lung
4	chr10:4945000-4954000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:4945200-4953600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:4945200-4954000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:4945200-4962200	Weak transcription	Ovary	ovary
8	chr10:4945800-4955600	Weak transcription	Liver	Liver
9	chr10:4946000-4973400	Weak transcription	Pancreas	Pancrea
10	chr10:4949600-4954800	Weak transcription	Fetal Lung	lung
11	chr10:4949800-4956000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:4950000-4954600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:4950600-4960400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:4951200-4953600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:4952000-4953600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:4952000-4955200	Weak transcription	Adipose Nuclei	Adipose
17	chr10:4952000-4964400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:4952200-4966600	Weak transcription	Left Ventricle	heart
19	chr10:4952200-4967800	Weak transcription	Right Ventricle	heart
20	chr10:4953200-4953800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:4953200-4953800	Enhancers	HMEC	breast
22	chr10:4953200-4954200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:4953400-4953600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:4953400-4953600	Enhancers	Esophagus	oesophagus
25	chr10:4953400-4954000	Enhancers	NHEK	skin

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