Variant report

Variant	rs7082553
Chromosome Location	chr10:50046869-50046870
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50040628..50043627-chr10:50045271..50047219,2	K562	blood:
2	chr10:50044913..50046986-chr10:50047284..50050012,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11101538	1.00[AMR][1000 genomes]
rs11101540	1.00[AMR][1000 genomes]
rs11101541	1.00[AMR][1000 genomes]
rs11101542	1.00[AMR][1000 genomes]
rs11101543	1.00[AMR][1000 genomes]
rs11101544	1.00[AMR][1000 genomes]
rs12260981	1.00[AMR][1000 genomes]
rs12265786	1.00[AMR][1000 genomes]
rs12267721	1.00[AMR][1000 genomes]
rs2127587	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:50015200-50063400	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50016200-50063000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr10:50016200-50063000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:50016600-50062400	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:50020000-50052000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:50025000-50062800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:50026000-50048200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:50028600-50070200	Strong transcription	Primary B cells from peripheral blood	blood
10	chr10:50029000-50051400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:50029200-50052000	Strong transcription	Primary hematopoietic stem cells	blood
12	chr10:50038200-50047600	Strong transcription	GM12878-XiMat	blood
13	chr10:50041600-50055400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:50042200-50059200	Weak transcription	Primary T cells from cord blood	blood
15	chr10:50044600-50057200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:50045400-50047200	Enhancers	Fetal Muscle Leg	muscle
17	chr10:50045400-50050200	Weak transcription	Spleen	Spleen
18	chr10:50046000-50047000	Weak transcription	Fetal Stomach	stomach
19	chr10:50046400-50047200	Enhancers	Fetal Muscle Trunk	muscle
20	chr10:50046400-50047200	Enhancers	Ovary	ovary
21	chr10:50046600-50047200	Enhancers	Left Ventricle	heart
22	chr10:50046800-50047200	ZNF genes & repeats	Lung	lung
23	chr10:50046800-50047200	Enhancers	Right Atrium	heart
24	chr10:50046800-50047800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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