Variant report

Variant	rs7082973
Chromosome Location	chr10:26987360-26987361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:26985323..26988042-chr10:27148387..27150466,3	MCF-7	breast:
2	chr10:26986021..26987940-chr10:27149008..27151636,2	MCF-7	breast:
3	chr10:26985918..26987566-chr10:27148462..27151237,2	K562	blood:
4	chr10:26985752..26988058-chr10:26992017..26994907,3	MCF-7	breast:
5	chr10:26986198..26989615-chr10:27022506..27024765,3	MCF-7	breast:
6	chr10:26986066..26987689-chr10:27148181..27149962,2	K562	blood:
7	chr10:26986774..26988762-chr10:27020723..27023686,2	K562	blood:

Variant related genes	Relation type
ENSG00000148459	Chromatin interaction
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10128125	1.00[AFR][1000 genomes]
rs10128192	1.00[AFR][1000 genomes]
rs11015221	0.96[AFR][1000 genomes]
rs11015226	1.00[AFR][1000 genomes]
rs11015230	1.00[AFR][1000 genomes]
rs11015233	1.00[AFR][1000 genomes]
rs11015234	1.00[AFR][1000 genomes]
rs12242239	1.00[AFR][1000 genomes]
rs12242246	0.96[AFR][1000 genomes]
rs12242414	1.00[AFR][1000 genomes]
rs12244725	0.96[AFR][1000 genomes]
rs12245051	1.00[AFR][1000 genomes]
rs12247299	1.00[AFR][1000 genomes]
rs12247597	1.00[AFR][1000 genomes]
rs12255942	0.87[AFR][1000 genomes]
rs12260035	1.00[AFR][1000 genomes]
rs12262401	1.00[AFR][1000 genomes]
rs12264994	0.96[AFR][1000 genomes]
rs12265633	1.00[AFR][1000 genomes]
rs12265746	1.00[AFR][1000 genomes]
rs12266764	0.96[AFR][1000 genomes]
rs12267744	0.96[AFR][1000 genomes]
rs12268014	0.96[AFR][1000 genomes]
rs17754039	1.00[AFR][1000 genomes]
rs17754051	1.00[AFR][1000 genomes]
rs7097696	1.00[AFR][1000 genomes]
rs72485017	1.00[AFR][1000 genomes]
rs72485026	1.00[AFR][1000 genomes]
rs7896604	1.00[AFR][1000 genomes]
rs7899804	0.96[AFR][1000 genomes]
rs7906473	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv1798973	chr10:26968171-27001814	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550233	chr10:26968171-27011323	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26985400-26988600	Active TSS	GM12878-XiMat	blood
2	chr10:26985600-26987400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:26985600-26987400	Active TSS	Fetal Kidney	kidney
4	chr10:26985600-26987600	Active TSS	H1 Cell Line	embryonic stem cell
5	chr10:26985600-26987600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:26985600-26987600	Active TSS	Fetal Muscle Trunk	muscle
7	chr10:26985600-26987800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:26985600-26987800	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr10:26985600-26988000	Active TSS	H9 Cell Line	embryonic stem cell
10	chr10:26985600-26988200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:26985600-26988200	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr10:26985600-26988200	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr10:26985600-26988200	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr10:26985600-26988200	Active TSS	A549	lung
15	chr10:26985600-26988400	Active TSS	Psoas Muscle	Psoas
16	chr10:26985800-26987400	Active TSS	Fetal Intestine Small	intestine
17	chr10:26985800-26987400	Active TSS	Small Intestine	intestine
18	chr10:26985800-26987600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:26985800-26987600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:26985800-26987600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:26985800-26987600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:26985800-26987600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:26985800-26987600	Active TSS	Esophagus	oesophagus
24	chr10:26985800-26987600	Active TSS	Fetal Heart	heart
25	chr10:26985800-26987800	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr10:26985800-26988000	Active TSS	Thymus	Thymus
27	chr10:26986000-26987400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:26986000-26987400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:26986000-26987400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:26986000-26987400	Active TSS	Muscle Satellite Cultured Cells	--
31	chr10:26986000-26987400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:26986000-26987400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:26986000-26987400	Active TSS	Fetal Brain Female	brain
34	chr10:26986000-26987400	Active TSS	Hela-S3	cervix
35	chr10:26986000-26987400	Bivalent/Poised TSS	HepG2	liver
36	chr10:26986000-26987400	Active TSS	HSMMtube	muscle
37	chr10:26986000-26987600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr10:26986000-26987600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:26986000-26987600	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr10:26986000-26987600	Active TSS	K562	blood
41	chr10:26986000-26987800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:26986000-26987800	Active TSS	Fetal Intestine Large	intestine
43	chr10:26986000-26987800	Active TSS	HMEC	breast
44	chr10:26986000-26987800	Active TSS	NHDF-Ad	bronchial
45	chr10:26986000-26987800	Active TSS	NHEK	skin
46	chr10:26986000-26988000	Active TSS	HSMM	muscle
47	chr10:26986000-26988200	Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr10:26986200-26987400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:26986800-26987600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr10:26986800-26987600	Flanking Active TSS	Primary B cells from cord blood	blood

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