Variant report

Variant	rs7083457
Chromosome Location	chr10:98780626-98780627
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98773602..98775670-chr10:98778246..98780739,2	K562	blood:
2	chr10:98760738..98762506-chr10:98779291..98781276,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12258328	0.88[EUR][1000 genomes]
rs12262174	0.83[EUR][1000 genomes]
rs57812299	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61034487	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98777400-98781000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:98777400-98781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:98777400-98782000	Enhancers	Fetal Muscle Leg	muscle
4	chr10:98777600-98781400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:98777600-98781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:98777600-98791000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:98778000-98780800	Weak transcription	Right Atrium	heart
8	chr10:98778000-98797200	Strong transcription	Fetal Thymus	thymus
9	chr10:98778400-98782000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:98778800-98781400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:98778800-98794400	Weak transcription	Thymus	Thymus
12	chr10:98779000-98784400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:98779200-98781200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:98779200-98781200	Enhancers	Right Ventricle	heart
15	chr10:98779200-98782600	Strong transcription	Fetal Brain Female	brain
16	chr10:98779400-98781200	Enhancers	Fetal Intestine Small	intestine
17	chr10:98779600-98781000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr10:98779600-98781200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:98779600-98782800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:98779800-98781000	Enhancers	Fetal Intestine Large	intestine
21	chr10:98779800-98781200	Enhancers	Fetal Lung	lung
22	chr10:98779800-98781800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr10:98780000-98780800	Flanking Bivalent TSS/Enh	HepG2	liver
24	chr10:98780000-98781000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:98780000-98781200	Enhancers	Rectal Smooth Muscle	rectum
26	chr10:98780000-98781200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr10:98780000-98781200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr10:98780000-98781400	Enhancers	Fetal Heart	heart
29	chr10:98780000-98782000	Enhancers	HSMMtube	muscle
30	chr10:98780000-98782200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr10:98780000-98782200	Enhancers	Brain Cingulate Gyrus	brain
32	chr10:98780200-98781000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:98780200-98781000	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr10:98780200-98781000	Enhancers	NH-A	brain
35	chr10:98780200-98781200	Enhancers	H1 Cell Line	embryonic stem cell
36	chr10:98780200-98781200	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr10:98780200-98781200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:98780200-98781200	Enhancers	Adipose Nuclei	Adipose
39	chr10:98780200-98781200	Enhancers	Fetal Brain Male	brain
40	chr10:98780200-98781200	Enhancers	Gastric	stomach
41	chr10:98780200-98781200	Enhancers	Left Ventricle	heart
42	chr10:98780200-98781200	Enhancers	Pancreas	Pancrea
43	chr10:98780200-98781200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr10:98780200-98781200	Enhancers	HSMM	muscle
45	chr10:98780200-98781400	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr10:98780200-98781400	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr10:98780200-98781400	Enhancers	Ovary	ovary
48	chr10:98780200-98782600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:98780400-98780800	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr10:98780400-98780800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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