Variant report

Variant	rs7083754
Chromosome Location	chr10:25118219-25118220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10741067	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10764501	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10764502	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10764504	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10764505	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10828703	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1575862	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1830987	0.82[AMR][1000 genomes]
rs1853946	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1932423	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7097342	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7909690	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7921726	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817285	chr10:25117363-25120376	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
2	esv1823501	chr10:25117363-25120376	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
3	esv1817326	chr10:25117363-25138323	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25111800-25140000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:25112200-25123400	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:25114600-25126400	Weak transcription	Fetal Lung	lung
4	chr10:25115400-25135600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:25115800-25126000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:25117400-25120800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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