Variant report

Variant	rs7084061
Chromosome Location	chr10:116188396-116188397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:116186374-116190877	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116180487..116182128-chr10:116186308..116189137,2	MCF-7	breast:
2	chr10:116188336..116192373-chr10:116194440..116198221,4	K562	blood:

Variant related genes	Relation type
RN7SL384P	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10885558	0.85[AMR][1000 genomes]
rs10885564	0.85[AMR][1000 genomes]
rs1535388	0.80[AMR][1000 genomes]
rs1575232	0.85[AMR][1000 genomes]
rs4751864	0.80[AMR][1000 genomes]
rs4752638	0.80[AMR][1000 genomes]
rs4752729	0.80[AMR][1000 genomes]
rs6585276	0.80[AMR][1000 genomes]
rs7099520	0.85[AMR][1000 genomes]
rs7910402	0.80[AMR][1000 genomes]
rs7917021	0.80[AMR][1000 genomes]
rs941856	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116178400-116189200	Weak transcription	Primary T cells from cord blood	blood
2	chr10:116180000-116196200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:116180800-116190200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:116181000-116189400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:116181000-116190400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:116181400-116190600	Weak transcription	HMEC	breast
7	chr10:116184400-116189400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr10:116185800-116189800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:116186000-116193600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:116186600-116193200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:116186600-116198200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:116186800-116194400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:116187000-116210400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:116187200-116189800	Weak transcription	Primary B cells from cord blood	blood
15	chr10:116187200-116192800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:116187200-116197800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:116187200-116203000	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:116187400-116189400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr10:116187400-116191000	Weak transcription	Fetal Lung	lung
20	chr10:116187400-116192000	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:116187400-116192200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:116187400-116194200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:116187400-116194400	Weak transcription	Fetal Heart	heart
24	chr10:116187400-116196400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:116187400-116198400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:116187600-116190000	Weak transcription	Lung	lung
27	chr10:116187600-116193200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:116187600-116193800	Weak transcription	Brain Angular Gyrus	brain
29	chr10:116187600-116194400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:116187600-116194400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr10:116187600-116198000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:116187600-116198400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:116187600-116198600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:116187600-116199000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:116187600-116204600	Weak transcription	Spleen	Spleen
36	chr10:116187800-116189200	Weak transcription	Fetal Stomach	stomach
37	chr10:116187800-116189800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:116187800-116189800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:116187800-116189800	Weak transcription	Adipose Nuclei	Adipose
40	chr10:116187800-116190200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:116187800-116190800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:116187800-116193400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr10:116187800-116193600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:116187800-116193800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:116187800-116196000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr10:116187800-116198000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr10:116187800-116198000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr10:116187800-116198000	Weak transcription	HSMM	muscle
49	chr10:116187800-116199800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:116187800-116207600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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