Variant report

Variant	rs7084326
Chromosome Location	chr10:49559031-49559032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49551581..49553904-chr10:49558075..49560720,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10776592	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10776593	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10776594	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10857563	0.87[EUR][1000 genomes]
rs10857564	0.87[EUR][1000 genomes]
rs10857565	0.87[EUR][1000 genomes]
rs1112268	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11597435	0.85[EUR][1000 genomes]
rs11598320	0.87[EUR][1000 genomes]
rs12358297	0.85[EUR][1000 genomes]
rs17780725	0.85[EUR][1000 genomes]
rs1881735	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1881737	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1881738	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1881740	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1881741	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1919706	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1919707	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1919709	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2141516	0.88[ASN][1000 genomes]
rs2178339	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2377140	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2377141	0.82[EUR][1000 genomes]
rs2377349	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2590382	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2590383	0.81[ASN][1000 genomes]
rs2590384	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2590385	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2590386	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2590391	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2698758	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2698762	0.87[EUR][1000 genomes]
rs2698768	0.87[EUR][1000 genomes]
rs2889595	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4012930	0.81[EUR][1000 genomes]
rs4838405	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4838588	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56078229	0.86[EUR][1000 genomes]
rs7068398	0.85[EUR][1000 genomes]
rs9919504	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	nsv6587	chr10:49526329-49571804	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49516400-49559600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:49541200-49559400	Weak transcription	Fetal Lung	lung
3	chr10:49542800-49568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:49543000-49576200	Weak transcription	Right Atrium	heart
5	chr10:49550400-49560800	Weak transcription	Psoas Muscle	Psoas
6	chr10:49552600-49568800	Weak transcription	NHDF-Ad	bronchial

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