Variant report

Variant	rs7086141
Chromosome Location	chr10:18270046-18270047
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10827981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12243207	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1299188	0.95[YRI][hapmap]
rs549855	0.89[YRI][hapmap]
rs55812394	0.93[EUR][1000 genomes]
rs58377250	0.86[EUR][1000 genomes]
rs691513	0.86[YRI][hapmap]
rs943330	1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18266800-18270200	Weak transcription	Aorta	Aorta
2	chr10:18266800-18276400	Weak transcription	Brain Substantia Nigra	brain
3	chr10:18268600-18270200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:18268600-18271600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:18268600-18271800	Enhancers	Osteobl	bone
6	chr10:18269000-18271200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:18269600-18270600	Enhancers	NH-A	brain
8	chr10:18269600-18271000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:18269600-18271600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr10:18269600-18271600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:18269600-18271800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:18269600-18271800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:18269600-18271800	Enhancers	NHDF-Ad	bronchial
14	chr10:18269800-18270200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:18269800-18270200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:18269800-18271400	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:18269800-18271800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr10:18269800-18271800	Enhancers	NHLF	lung
19	chr10:18270000-18271200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:18270000-18271200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:18270000-18271200	Enhancers	HSMM	muscle
22	chr10:18270000-18271600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:18270000-18271800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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