Variant report

Variant	rs7086343
Chromosome Location	chr10:116170774-116170775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116162670..116164561-chr10:116169325..116171816,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169129	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10885561	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10885562	0.81[AFR][1000 genomes]
rs7081297	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116165000-116172000	Weak transcription	Esophagus	oesophagus
2	chr10:116165000-116172600	Weak transcription	Pancreas	Pancrea
3	chr10:116165400-116172200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:116168400-116172200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:116168600-116172400	Weak transcription	Adipose Nuclei	Adipose
6	chr10:116168800-116172400	Weak transcription	NHLF	lung
7	chr10:116169200-116172000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:116169200-116172200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:116169200-116172200	Weak transcription	A549	lung
10	chr10:116169200-116172200	Weak transcription	NHEK	skin
11	chr10:116169200-116172400	Weak transcription	NH-A	brain
12	chr10:116169200-116172800	Weak transcription	NHDF-Ad	bronchial
13	chr10:116169400-116171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:116169600-116172000	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:116169600-116172600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:116169600-116177600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:116169800-116172600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:116170000-116172000	Weak transcription	Spleen	Spleen
19	chr10:116170000-116172800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:116170200-116172600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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