Variant report

Variant	rs7087560
Chromosome Location	chr10:97017706-97017707
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11188253	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188254	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596920	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597364	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768190	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026679	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296962	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296963	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296964	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34566882	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917682	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918907	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583987	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7067902	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068656	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079728	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095761	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101278	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7895650	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910388	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923547	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96991000-97020400	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:96991000-97024000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:96991400-97019000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:96998400-97030200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:97000400-97024400	Weak transcription	Fetal Kidney	kidney
6	chr10:97006400-97019600	Weak transcription	K562	blood
7	chr10:97007000-97026400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:97007600-97020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:97007800-97020800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:97008000-97019400	Weak transcription	Placenta	Placenta
11	chr10:97008000-97020200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:97008200-97017800	Weak transcription	Osteobl	bone
13	chr10:97008600-97019800	Weak transcription	HSMM	muscle
14	chr10:97008800-97019800	Weak transcription	Fetal Thymus	thymus
15	chr10:97009000-97019200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:97009000-97020400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:97009200-97019600	Weak transcription	Esophagus	oesophagus
18	chr10:97009200-97020200	Weak transcription	Pancreas	Pancrea
19	chr10:97009200-97020600	Weak transcription	Fetal Lung	lung
20	chr10:97009200-97028200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:97009600-97019600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr10:97009800-97019200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:97009800-97019200	Weak transcription	Small Intestine	intestine
24	chr10:97009800-97019200	Weak transcription	Spleen	Spleen
25	chr10:97009800-97020000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:97009800-97020000	Weak transcription	Fetal Heart	heart
27	chr10:97009800-97020400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:97009800-97020800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:97011600-97019200	Weak transcription	Aorta	Aorta
30	chr10:97012000-97019800	Weak transcription	Colonic Mucosa	Colon
31	chr10:97012200-97017800	Weak transcription	Gastric	stomach
32	chr10:97012200-97019200	Weak transcription	Lung	lung
33	chr10:97012200-97019600	Weak transcription	Fetal Stomach	stomach
34	chr10:97012200-97019800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:97012200-97020200	Weak transcription	Psoas Muscle	Psoas
36	chr10:97014400-97020200	Weak transcription	Stomach Mucosa	stomach
37	chr10:97014600-97019800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:97014800-97019800	Weak transcription	HUVEC	blood vessel
39	chr10:97015400-97020200	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr10:97015400-97022000	Strong transcription	Primary B cells from peripheral blood	blood
41	chr10:97015800-97018600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:97016000-97018000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:97016000-97018200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:97016000-97019200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:97016000-97019600	Strong transcription	NHEK	skin
46	chr10:97016000-97020000	Strong transcription	Fetal Intestine Large	intestine
47	chr10:97016000-97020200	Strong transcription	Liver	Liver
48	chr10:97016000-97020600	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr10:97016000-97020600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr10:97016200-97017800	Strong transcription	HSMMtube	muscle

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