Variant report

Variant	rs708887
Chromosome Location	chr12:119960612-119960613
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1090247	1.00[YRI][hapmap]
rs1716458	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap]
rs1727428	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap]
rs2695512	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs2711744	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs579005	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs708884	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.82[LWK][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs708885	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap]
rs708889	0.84[ASW][hapmap];0.84[LWK][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap]
rs784847	0.84[ASW][hapmap];0.84[LWK][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap]
rs809225	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832529	chr12:119863378-120071646	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs708887	WSB2	cis	cerebellum	SCAN
rs708887	HRK	cis	parietal	SCAN
rs708887	FBXW8	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119960200-119961000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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