Variant report

Variant	rs7089053
Chromosome Location	chr10:16388972-16388973
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11253859	1.00[AMR][1000 genomes]
rs11253909	1.00[AMR][1000 genomes]
rs11253918	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11253919	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11253920	1.00[AMR][1000 genomes]
rs11253921	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11253934	1.00[AMR][1000 genomes]
rs11253935	1.00[AMR][1000 genomes]
rs12241220	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241886	1.00[AMR][1000 genomes]
rs12241910	1.00[AMR][1000 genomes]
rs12243924	1.00[AMR][1000 genomes]
rs12256213	1.00[AMR][1000 genomes]
rs12256596	1.00[AMR][1000 genomes]
rs12258443	1.00[AMR][1000 genomes]
rs12259093	1.00[AMR][1000 genomes]
rs12262308	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376874	1.00[AMR][1000 genomes]
rs7904851	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv870420	chr10:16225427-16541252	Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv894904	chr10:16233175-16477106	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831796	chr10:16240111-16393044	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1051284	chr10:16321532-16392126	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv521864	chr10:16386748-16389315	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16371800-16402200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:16388600-16390600	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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