Variant report

Variant	rs7089649
Chromosome Location	chr10:95771668-95771669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95771190..95773750-chr10:95781125..95784580,3	MCF-7	breast:
2	chr10:95767452..95769143-chr10:95770198..95772913,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58282081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58396211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58546311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58626531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61376562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61648184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74151944	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74151949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911800	1.00[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95766800-95776600	Weak transcription	Small Intestine	intestine
2	chr10:95767000-95776800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:95767400-95776800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:95767600-95777400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:95767800-95774400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:95767800-95775200	Weak transcription	Psoas Muscle	Psoas
7	chr10:95767800-95776800	Weak transcription	HSMMtube	muscle
8	chr10:95767800-95789800	Weak transcription	Pancreas	Pancrea
9	chr10:95768400-95783000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:95768800-95773600	Weak transcription	Gastric	stomach
11	chr10:95770000-95800800	Weak transcription	Colonic Mucosa	Colon
12	chr10:95770200-95774600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:95770200-95776800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:95770200-95776800	Weak transcription	Fetal Stomach	stomach
15	chr10:95770200-95778000	Weak transcription	Fetal Intestine Large	intestine
16	chr10:95770200-95778000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:95770400-95783800	Weak transcription	Fetal Intestine Small	intestine
18	chr10:95770600-95772000	Enhancers	Placenta	Placenta
19	chr10:95770600-95776800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:95770800-95772400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:95770800-95773600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr10:95771000-95772000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:95771000-95772200	Weak transcription	A549	lung
24	chr10:95771200-95772600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:95771400-95772200	Weak transcription	Stomach Mucosa	stomach
26	chr10:95771600-95772400	Enhancers	Right Atrium	heart
27	chr10:95771600-95773200	Genic enhancers	Fetal Muscle Leg	muscle

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