Variant report

Variant	rs7090170
Chromosome Location	chr10:61321907-61321908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1875147	0.98[ASN][1000 genomes]
rs1909639	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv551150	chr10:61286904-61330297	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3693063	chr10:61316344-61331087	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61317600-61324000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:61319600-61322200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:61320600-61322400	Enhancers	Colon Smooth Muscle	Colon
4	chr10:61320800-61322200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:61320800-61322200	Enhancers	Osteobl	bone
6	chr10:61320800-61322600	Enhancers	Stomach Smooth Muscle	stomach
7	chr10:61321000-61322400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:61321000-61322400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:61321600-61322000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:61321600-61322600	Enhancers	HSMMtube	muscle
11	chr10:61321600-61324200	Enhancers	NHDF-Ad	bronchial
12	chr10:61321800-61322000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:61321800-61322600	Enhancers	Rectal Smooth Muscle	rectum
14	chr10:61321800-61323200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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