Variant report

Variant	rs7092724
Chromosome Location	chr10:6424196-6424197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6242967..6246327-chr10:6423283..6428365,4	MCF-7	breast:
2	chr10:6423351..6425174-chr10:6425567..6427975,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170525	Chromatin interaction
ENSG00000213994	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10796061	0.82[AFR][1000 genomes]
rs10906351	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10906402	0.84[CHB][hapmap]
rs11258423	0.84[CHB][hapmap]
rs12774756	0.82[ASN][1000 genomes]
rs1341929	0.87[LWK][hapmap];0.81[AFR][1000 genomes]
rs34003677	0.92[ASN][1000 genomes]
rs7099474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898161	0.84[CHB][hapmap]
rs7907167	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv5676	chr10:6381200-6428950	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv508567	chr10:6407682-6427637	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6422600-6424200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:6423200-6425200	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:6423400-6424800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr10:6423400-6425000	Flanking Active TSS	Dnd41	blood
5	chr10:6423400-6425600	Enhancers	Placenta	Placenta
6	chr10:6423400-6425600	Enhancers	Spleen	Spleen
7	chr10:6423400-6426000	Enhancers	Colon Smooth Muscle	Colon
8	chr10:6423400-6426200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:6423400-6428400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:6423600-6424200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:6423600-6424200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr10:6423600-6424200	Enhancers	Adipose Nuclei	Adipose
13	chr10:6423600-6424200	Enhancers	Brain Cingulate Gyrus	brain
14	chr10:6423600-6424200	Enhancers	Brain Hippocampus Middle	brain
15	chr10:6423600-6424200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:6423600-6424400	Enhancers	Brain Anterior Caudate	brain
17	chr10:6423600-6424600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr10:6423600-6424600	Active TSS	Colonic Mucosa	Colon
19	chr10:6423600-6424800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:6423600-6424800	Enhancers	Fetal Muscle Leg	muscle
21	chr10:6423600-6425000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr10:6423600-6425200	Enhancers	Primary hematopoietic stem cells	blood
23	chr10:6423600-6425200	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr10:6423600-6425400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr10:6423600-6425400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr10:6423600-6425400	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr10:6423600-6425400	Enhancers	Thymus	Thymus
28	chr10:6423600-6425400	Flanking Active TSS	HSMMtube	muscle
29	chr10:6423600-6425600	Enhancers	Brain Germinal Matrix	brain
30	chr10:6423600-6425600	Enhancers	NHDF-Ad	bronchial
31	chr10:6423800-6424200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:6423800-6424400	Enhancers	Brain Substantia Nigra	brain
33	chr10:6423800-6424400	Enhancers	Stomach Mucosa	stomach
34	chr10:6423800-6424400	Flanking Active TSS	HSMM	muscle
35	chr10:6423800-6424600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr10:6423800-6424600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:6423800-6424600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr10:6423800-6424600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:6423800-6424800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:6423800-6424800	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr10:6423800-6424800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:6423800-6424800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:6423800-6424800	Enhancers	Osteobl	bone
44	chr10:6423800-6425000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr10:6423800-6425200	Enhancers	Fetal Thymus	thymus
46	chr10:6423800-6425400	Enhancers	Fetal Lung	lung
47	chr10:6423800-6425400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr10:6423800-6425400	Enhancers	NH-A	brain
49	chr10:6423800-6425600	Enhancers	Aorta	Aorta
50	chr10:6423800-6425600	Enhancers	Brain Angular Gyrus	brain

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