Variant report

Variant	rs7093550
Chromosome Location	chr10:1797305-1797306
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12570576	0.92[JPT][hapmap]
rs12573454	0.84[ASN][1000 genomes]
rs12769731	0.85[ASN][1000 genomes]
rs1316272	0.80[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs41524446	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59088352	0.87[ASN][1000 genomes]
rs74109526	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1046041	chr10:1195214-2189155	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1037054	chr10:1232041-1865296	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv540413	chr10:1232041-1865296	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv549786	chr10:1293100-1904598	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1054555	chr10:1558145-1965145	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052401	chr10:1582012-1964762	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv540417	chr10:1582012-1964762	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1043576	chr10:1667645-1901205	Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1042322	chr10:1700702-1799598	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv894743	chr10:1714379-1816298	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1795000-1799600	Weak transcription	Right Atrium	heart
2	chr10:1796400-1798400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:1796600-1797400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:1796600-1797400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:1796600-1797800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:1796600-1797800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr10:1796600-1797800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:1796600-1797800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:1796600-1797800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:1796600-1797800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:1796600-1798200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:1796600-1798200	Enhancers	Brain Substantia Nigra	brain
13	chr10:1796800-1797400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:1796800-1797400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:1796800-1797400	Enhancers	Brain Germinal Matrix	brain
16	chr10:1796800-1797800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:1796800-1797800	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr10:1796800-1798000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:1796800-1798000	Enhancers	Pancreas	Pancrea
20	chr10:1797000-1797400	Flanking Active TSS	Brain Cingulate Gyrus	brain
21	chr10:1797000-1797600	Enhancers	Brain Anterior Caudate	brain
22	chr10:1797000-1797600	Enhancers	Esophagus	oesophagus
23	chr10:1797000-1797800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr10:1797200-1797400	Bivalent Enhancer	Fetal Stomach	stomach
25	chr10:1797200-1797600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr10:1797200-1797600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:1797200-1797800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr10:1797200-1797800	Enhancers	Primary B cells from peripheral blood	blood
29	chr10:1797200-1797800	Enhancers	Brain Angular Gyrus	brain
30	chr10:1797200-1798200	Enhancers	Brain Hippocampus Middle	brain

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