Variant report

Variant	rs7093632
Chromosome Location	chr10:49773799-49773800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49761230..49763552-chr10:49773026..49775938,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10776618	0.88[LWK][hapmap]
rs10776622	0.82[CEU][hapmap]
rs10776625	0.85[CEU][hapmap]
rs1078261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10857600	0.82[CEU][hapmap]
rs10857601	0.81[CEU][hapmap]
rs10857603	0.82[CEU][hapmap]
rs11101383	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11599380	0.82[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.81[MEX][hapmap]
rs12766573	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1373791	0.82[CEU][hapmap]
rs1373793	0.82[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap]
rs1373795	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs1838571	1.00[CHD][hapmap]
rs1838572	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1867588	0.82[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.81[MEX][hapmap]
rs2004665	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4838419	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4838620	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7895981	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7919520	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs935265	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs935266	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs935267	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs935268	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs935269	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs935270	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs935276	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv6609	chr10:49770419-49778210	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49742600-49774800	Weak transcription	Aorta	Aorta
2	chr10:49757400-49782200	Weak transcription	HSMMtube	muscle
3	chr10:49761600-49780600	Weak transcription	HUVEC	blood vessel
4	chr10:49763200-49780800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:49764400-49777800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:49765000-49776400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:49765400-49774000	Weak transcription	NHDF-Ad	bronchial
8	chr10:49766000-49776800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:49770000-49775200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:49770800-49777400	Weak transcription	NH-A	brain
11	chr10:49771600-49779000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:49771800-49780200	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr10:49772000-49776800	Strong transcription	Osteobl	bone
14	chr10:49772600-49775200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:49773000-49782600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:49773000-49787400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:49773200-49774000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:49773200-49776200	Weak transcription	Brain Substantia Nigra	brain
19	chr10:49773200-49787800	Weak transcription	Brain Angular Gyrus	brain
20	chr10:49773400-49774400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:49773400-49778000	Strong transcription	NHLF	lung
22	chr10:49773400-49786200	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:49773400-49786600	Strong transcription	HSMM	muscle
24	chr10:49773600-49779400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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