Variant report

Variant	rs709370
Chromosome Location	chr5:101624393-101624394
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10434748	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10434749	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10463981	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10515326	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1098806	0.84[ASN][1000 genomes]
rs12658397	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs1376905	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1376907	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1452058	0.87[ASN][1000 genomes]
rs17333350	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs174414	0.80[JPT][hapmap]
rs1982418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2113091	0.81[ASN][1000 genomes]
rs2113092	0.80[JPT][hapmap]
rs2123136	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2161601	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2263376	0.84[CEU][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2400800	0.90[ASN][1000 genomes]
rs2548724	0.83[CEU][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2600824	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2600825	0.83[CEU][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2600827	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2600828	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2600830	0.82[CEU][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2600832	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2600834	0.83[CEU][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2600835	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs261098	0.81[ASN][1000 genomes]
rs261100	0.81[ASN][1000 genomes]
rs261101	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs3096195	0.81[ASN][1000 genomes]
rs3096196	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs3114659	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs370176	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs390614	0.90[JPT][hapmap]
rs402846	0.81[ASN][1000 genomes]
rs420900	0.84[CEU][hapmap];0.90[JPT][hapmap]
rs431778	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs432190	0.90[JPT][hapmap]
rs434771	0.81[ASN][1000 genomes]
rs438617	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs4386713	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs452857	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4703224	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57415604	0.83[ASN][1000 genomes]
rs58644688	0.83[ASN][1000 genomes]
rs62369303	0.81[ASN][1000 genomes]
rs62369304	0.83[ASN][1000 genomes]
rs62372171	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62372211	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62372300	0.90[ASN][1000 genomes]
rs6596486	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6881112	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6884141	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6893520	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7710414	0.80[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7714927	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7728630	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7733501	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7734060	0.95[CHB][hapmap]
rs841920	0.84[ASN][1000 genomes]
rs841922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs841926	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs841932	0.94[ASN][1000 genomes]
rs841934	0.84[CEU][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022551	chr5:101366177-101649643	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv882505	chr5:101397849-101652251	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028787	chr5:101432086-101718569	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv522882	chr5:101596633-101782930	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1029894	chr5:101620079-102516827	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101606400-101624400	Weak transcription	Liver	Liver
2	chr5:101613400-101624400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr5:101613400-101629400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:101614400-101624400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:101618600-101624400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:101619200-101630800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr5:101619600-101624400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:101620600-101630600	Weak transcription	GM12878-XiMat	blood
9	chr5:101622800-101624400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr5:101622800-101630200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:101623600-101624800	Enhancers	HepG2	liver
12	chr5:101624200-101624400	Enhancers	Pancreas	Pancrea

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