Variant report

Variant	rs70937086
Chromosome Location	chr2:173463646-173463647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173456525..173460577-chr2:173461176..173464180,4	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2272497	1.00[AMR][1000 genomes]
rs55667609	1.00[AMR][1000 genomes]
rs55767844	1.00[AMR][1000 genomes]
rs59606385	0.86[ASN][1000 genomes]
rs59685886	0.96[ASN][1000 genomes]
rs59990001	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61194109	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv3035	chr2:173419058-173463901	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv875415	chr2:173444462-173501069	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv875416	chr2:173444462-173504674	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv875417	chr2:173460803-173501069	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv875418	chr2:173460803-173504674	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173421800-173465200	Weak transcription	Small Intestine	intestine
2	chr2:173431400-173480600	Weak transcription	Gastric	stomach
3	chr2:173440200-173467600	Weak transcription	NH-A	brain
4	chr2:173443200-173472200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr2:173444000-173464000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:173444200-173470400	Weak transcription	Psoas Muscle	Psoas
7	chr2:173444400-173480200	Strong transcription	HepG2	liver
8	chr2:173444600-173465400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:173445400-173471000	Weak transcription	Brain Substantia Nigra	brain
10	chr2:173451200-173465200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:173451800-173471800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:173452000-173479800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr2:173452400-173469400	Weak transcription	Lung	lung
14	chr2:173452800-173478000	Weak transcription	Fetal Brain Male	brain
15	chr2:173452800-173478600	Weak transcription	Spleen	Spleen
16	chr2:173453800-173472400	Weak transcription	Brain Angular Gyrus	brain
17	chr2:173453800-173478600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:173454000-173463800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr2:173454000-173464200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr2:173454000-173471600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr2:173454200-173465200	Weak transcription	Fetal Lung	lung
22	chr2:173454200-173475200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:173454400-173477800	Weak transcription	Pancreas	Pancrea
24	chr2:173454400-173479800	Weak transcription	Esophagus	oesophagus
25	chr2:173454400-173489000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr2:173454600-173477800	Weak transcription	NHLF	lung
27	chr2:173454800-173475200	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr2:173454800-173477800	Weak transcription	Colonic Mucosa	Colon
29	chr2:173454800-173488200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr2:173455200-173480200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr2:173455400-173478400	Weak transcription	Fetal Muscle Leg	muscle
32	chr2:173455800-173465400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr2:173457000-173469000	Strong transcription	Primary B cells from peripheral blood	blood
34	chr2:173457200-173464000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr2:173457200-173464400	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr2:173457200-173466600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:173457200-173480000	Strong transcription	Dnd41	blood
38	chr2:173457400-173463800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr2:173457800-173464400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr2:173460400-173468000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr2:173460800-173479000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr2:173461200-173465800	Enhancers	Fetal Heart	heart
43	chr2:173461200-173472200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr2:173461400-173488800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr2:173461400-173504200	Weak transcription	NHEK	skin
46	chr2:173461800-173470400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr2:173461800-173470800	Weak transcription	NHDF-Ad	bronchial
48	chr2:173462000-173465200	Weak transcription	HSMMtube	muscle
49	chr2:173462200-173465200	Weak transcription	Ovary	ovary
50	chr2:173462200-173467400	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links