Variant report

Variant	rs7094655
Chromosome Location	chr10:52370225-52370226
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:52359176..52362800-chr10:52370214..52372763,3	K562	blood:
2	chr10:52366580..52370875-chr10:52371309..52374318,4	K562	blood:
3	chr10:52359953..52362709-chr10:52369369..52373300,4	MCF-7	breast:
4	chr10:52369031..52370676-chr10:52373294..52376073,2	MCF-7	breast:
5	chr10:52316576..52318310-chr10:52369103..52371692,2	K562	blood:
6	chr10:52359176..52361319-chr10:52370214..52372763,2	K562	blood:
7	chr10:52365691..52371767-chr10:52381261..52385919,7	K562	blood:
8	chr10:52369146..52370926-chr10:52380140..52382580,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198964	Chromatin interaction
ENSG00000226200	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10740762	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10763590	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10826242	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11006281	0.98[ASN][1000 genomes]
rs17497064	0.96[ASN][1000 genomes]
rs3001879	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3001883	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3001885	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3011714	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4268459	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935735	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935736	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4935737	0.96[ASN][1000 genomes]
rs4935739	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6481442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6481461	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7067552	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073182	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7089882	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7090996	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7097359	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7903649	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7904101	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7908136	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7909486	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7918559	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7094655	FLJ31958	N/A	lymphoblastoid	RTeQTL

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52341200-52373000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:52360200-52375600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:52362200-52372400	Weak transcription	Esophagus	oesophagus
4	chr10:52363200-52371600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:52363200-52372000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:52364400-52372000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr10:52364400-52374400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr10:52365000-52371000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:52365200-52374000	Weak transcription	Placenta	Placenta
10	chr10:52365400-52370800	Weak transcription	Lung	lung
11	chr10:52365400-52371200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:52365400-52371200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:52365400-52371400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:52365400-52375000	Weak transcription	Fetal Brain Female	brain
15	chr10:52365400-52379400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:52365600-52370600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:52365600-52372000	Weak transcription	Fetal Kidney	kidney
18	chr10:52365600-52377200	Weak transcription	Primary T cells from cord blood	blood
19	chr10:52365800-52372400	Weak transcription	Fetal Intestine Small	intestine
20	chr10:52365800-52378200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:52366000-52373000	Weak transcription	Fetal Intestine Large	intestine
22	chr10:52366000-52381600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:52366600-52370800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:52366600-52372600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:52366600-52377800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:52367200-52377800	Weak transcription	Primary B cells from cord blood	blood
27	chr10:52367200-52379400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:52367400-52381400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:52367600-52371600	Weak transcription	Fetal Brain Male	brain
30	chr10:52367600-52372000	Weak transcription	GM12878-XiMat	blood
31	chr10:52367600-52372800	Weak transcription	NHDF-Ad	bronchial
32	chr10:52367600-52378400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr10:52367600-52381400	Weak transcription	NHLF	lung
34	chr10:52367600-52381400	Weak transcription	Osteobl	bone
35	chr10:52368000-52372600	Weak transcription	HepG2	liver
36	chr10:52368000-52374200	Weak transcription	Stomach Mucosa	stomach
37	chr10:52368200-52371800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:52368200-52373400	Enhancers	Fetal Muscle Leg	muscle
39	chr10:52368200-52375400	Enhancers	Pancreas	Pancrea
40	chr10:52368400-52371200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr10:52368400-52371800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:52368400-52372400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:52368600-52370600	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr10:52368800-52371600	Weak transcription	Aorta	Aorta
45	chr10:52368800-52372800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr10:52369000-52371000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr10:52369000-52378800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:52369200-52371000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:52369200-52372600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr10:52369200-52375800	Enhancers	Fetal Heart	heart

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