Variant report
| Variant | rs7095545 |
|---|---|
| Chromosome Location | chr10:82901398-82901399 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr10:82901295-82901489 | MCF10A-Er-Src | breast: | n/a | n/a |
| 2 | FOS | chr10:82901294-82901440 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000265990 | TF binding region |
| RPA2P2 | TF binding region |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs17093983 | 0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs35283742 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4319456 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7075925 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7899151 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7915587 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043546 | chr10:82745555-82940404 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv540724 | chr10:82745555-82940404 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv517526 | chr10:82878488-82914029 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv551647 | chr10:82878488-82917110 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv518030 | chr10:82879719-82941755 | ZNF genes & repeats Weak transcription Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
