Variant report

Variant	rs7095926
Chromosome Location	chr10:6180988-6180989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6171306..6174580-chr10:6176089..6182503,5	MCF-7	breast:
2	chr10:6157377..6159891-chr10:6179224..6181720,2	MCF-7	breast:
3	chr10:6180971..6185195-chr10:6203384..6207419,4	MCF-7	breast:
4	chr10:6179137..6182411-chr10:6242546..6245142,3	MCF-7	breast:
5	chr10:6175966..6181179-chr10:6182519..6187998,8	K562	blood:

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11256909	0.85[AMR][1000 genomes]
rs11256933	0.83[AFR][1000 genomes]
rs1571022	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17150879	0.83[AFR][1000 genomes]
rs3750671	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4515866	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7084255	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7905327	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv894816	chr10:6173416-6190343	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv894817	chr10:6173416-6251252	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6171400-6183200	Weak transcription	Right Atrium	heart
2	chr10:6172200-6182800	Weak transcription	Brain Angular Gyrus	brain
3	chr10:6172400-6181600	Weak transcription	Spleen	Spleen
4	chr10:6172400-6182200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:6173000-6181000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:6176600-6185000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:6176800-6182000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:6177200-6181400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:6177200-6181600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:6177200-6181800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:6177200-6182000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:6178200-6182000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr10:6178600-6182000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr10:6179000-6182000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:6179000-6182000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:6179000-6182000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:6179000-6182400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:6179200-6181600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:6179200-6182000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:6179200-6182200	Weak transcription	HSMM	muscle
21	chr10:6179400-6181600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:6179400-6181800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr10:6179400-6182000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:6179400-6182000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:6179400-6182000	Weak transcription	Adipose Nuclei	Adipose
26	chr10:6179400-6182400	Weak transcription	NHLF	lung
27	chr10:6179400-6182600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:6179800-6181000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:6180600-6183400	Weak transcription	Esophagus	oesophagus

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