Variant report

Variant	rs7096193
Chromosome Location	chr10:116262791-116262792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:116262580-116262852	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116262150..116264376-chr10:116274849..116277700,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229668	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11196754	0.92[CEU][hapmap];0.91[LWK][hapmap];0.85[MKK][hapmap];0.82[EUR][1000 genomes]
rs1923285	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2145896	0.94[ASW][hapmap];0.96[CEU][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2475226	0.96[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2475228	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2475230	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2475231	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2497701	0.91[ASN][1000 genomes]
rs2497702	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2497703	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6585284	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7067793	0.81[EUR][1000 genomes]
rs9421177	1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116214600-116263600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:116222200-116264400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:116225000-116267200	Weak transcription	Aorta	Aorta
4	chr10:116225600-116278800	Weak transcription	HSMM	muscle
5	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
6	chr10:116249600-116264800	Weak transcription	Pancreas	Pancrea
7	chr10:116250200-116264600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:116250200-116265200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:116252000-116267200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:116252200-116264800	Weak transcription	Brain Substantia Nigra	brain
11	chr10:116252400-116263800	Weak transcription	Hela-S3	cervix
12	chr10:116252600-116262800	Weak transcription	Psoas Muscle	Psoas
13	chr10:116252600-116264800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:116252600-116264800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:116252600-116264800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:116253200-116264600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:116253200-116264800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:116255400-116263000	Weak transcription	Fetal Lung	lung
19	chr10:116255400-116264200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:116255400-116264600	Weak transcription	Fetal Kidney	kidney
21	chr10:116256000-116264600	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:116256800-116263600	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr10:116256800-116264600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:116256800-116264800	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:116258000-116271400	Enhancers	Stomach Mucosa	stomach
26	chr10:116258200-116263200	Enhancers	Primary T cells fromperipheralblood	blood
27	chr10:116258800-116263200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:116259000-116263000	Enhancers	Primary hematopoietic stem cells	blood
29	chr10:116259400-116263200	Enhancers	Primary B cells from peripheral blood	blood
30	chr10:116259400-116263200	Enhancers	Ovary	ovary
31	chr10:116259600-116272000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:116259800-116263000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:116259800-116263400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:116259800-116264000	Weak transcription	HSMMtube	muscle
35	chr10:116259800-116264800	Weak transcription	Brain Anterior Caudate	brain
36	chr10:116259800-116267200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:116259800-116267200	Weak transcription	Lung	lung
38	chr10:116259800-116276800	Weak transcription	Thymus	Thymus
39	chr10:116260000-116262800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:116260000-116264400	Weak transcription	Adipose Nuclei	Adipose
41	chr10:116260000-116264800	Weak transcription	Liver	Liver
42	chr10:116260000-116267200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:116260000-116268800	Weak transcription	Gastric	stomach
44	chr10:116260000-116269800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr10:116260000-116272800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr10:116260200-116265200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr10:116260200-116268800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:116260400-116264200	Weak transcription	Left Ventricle	heart
49	chr10:116260400-116264600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:116260400-116264800	Weak transcription	Right Atrium	heart

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