Variant report

Variant	rs7096656
Chromosome Location	chr10:97501854-97501855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97453039..97455216-chr10:97500286..97502655,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119977	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs7078031	1.00[AFR][1000 genomes]
rs7078291	1.00[AFR][1000 genomes]
rs7078423	1.00[AFR][1000 genomes]
rs7089810	1.00[AFR][1000 genomes]
rs7100702	1.00[AFR][1000 genomes]
rs7903181	1.00[AFR][1000 genomes]
rs7914690	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97500400-97503800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:97500800-97502800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:97501000-97502000	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr10:97501000-97503600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:97501200-97502000	Enhancers	Colon Smooth Muscle	Colon
6	chr10:97501200-97502000	Enhancers	Duodenum Mucosa	Duodenum
7	chr10:97501200-97502000	Enhancers	Fetal Lung	lung
8	chr10:97501200-97502400	Enhancers	Fetal Stomach	stomach
9	chr10:97501200-97502800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:97501200-97503200	Enhancers	Rectal Smooth Muscle	rectum
11	chr10:97501400-97502000	Enhancers	Fetal Muscle Leg	muscle
12	chr10:97501400-97502000	Enhancers	Osteobl	bone
13	chr10:97501400-97502200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:97501400-97502200	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:97501400-97502200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:97501400-97502200	Flanking Active TSS	GM12878-XiMat	blood
17	chr10:97501400-97502600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:97501400-97502600	Enhancers	Brain Anterior Caudate	brain
19	chr10:97501400-97502600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr10:97501400-97503000	Enhancers	Stomach Mucosa	stomach
21	chr10:97501400-97503200	Enhancers	NH-A	brain
22	chr10:97501600-97502000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:97501600-97502000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:97501600-97502000	Enhancers	Fetal Thymus	thymus
25	chr10:97501600-97502000	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr10:97501600-97502200	Flanking Active TSS	Primary B cells from peripheral blood	blood
27	chr10:97501600-97502200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:97501600-97502200	Enhancers	Stomach Smooth Muscle	stomach
29	chr10:97501600-97502600	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr10:97501600-97502800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr10:97501600-97503200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:97501800-97502000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr10:97501800-97502000	Flanking Active TSS	HepG2	liver
34	chr10:97501800-97502200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr10:97501800-97502200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:97501800-97502200	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr10:97501800-97502200	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:97501800-97502200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr10:97501800-97502200	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr10:97501800-97502200	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr10:97501800-97502200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:97501800-97502200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:97501800-97502200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
44	chr10:97501800-97502400	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr10:97501800-97502400	Flanking Active TSS	HUVEC	blood vessel
46	chr10:97501800-97502600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:97501800-97502800	Weak transcription	Adipose Nuclei	Adipose

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