Variant report

Variant	rs7097144
Chromosome Location	chr10:5735935-5735936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5733731..5736743-chr10:5750015..5755601,4	MCF-7	breast:
2	chr10:5487726..5489985-chr10:5734513..5736734,2	K562	blood:
3	chr10:5726775..5729176-chr10:5734287..5736106,2	MCF-7	breast:
4	chr10:5734758..5736346-chr10:5739333..5741720,2	MCF-7	breast:
5	chr10:5724274..5728540-chr10:5734829..5741563,8	MCF-7	breast:
6	chr10:5735790..5738712-chr10:5931841..5933412,2	MCF-7	breast:
7	chr10:5734808..5736462-chr10:5936256..5938867,2	K562	blood:
8	chr10:5702075..5704019-chr10:5735223..5736822,2	MCF-7	breast:
9	chr10:5706961..5708705-chr10:5733482..5736246,2	K562	blood:
10	chr10:5487726..5489985-chr10:5734513..5736734,3	K562	blood:
11	chr10:5733787..5736575-chr10:5751182..5753712,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000134461	Chromatin interaction
ENSG00000108021	Chromatin interaction
ENSG00000173848	Chromatin interaction
ENSG00000134452	Chromatin interaction
ENSG00000196372	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10128251	1.00[ASN][1000 genomes]
rs10752281	1.00[ASN][1000 genomes]
rs12762316	1.00[ASN][1000 genomes]
rs12777965	1.00[ASN][1000 genomes]
rs3209286	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748018	1.00[ASN][1000 genomes]
rs6602819	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908235	0.87[EUR][1000 genomes]
rs9424204	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	esv1796213	chr10:5716555-5766165	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv522415	chr10:5721653-5768493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv8600	chr10:5733691-5736727	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5728800-5746800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr10:5734800-5763400	Weak transcription	HSMM	muscle
3	chr10:5735000-5736400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:5735000-5736800	Enhancers	Small Intestine	intestine
5	chr10:5735200-5736000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:5735200-5736000	Enhancers	NH-A	brain
7	chr10:5735200-5736200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:5735200-5736200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:5735200-5736200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:5735200-5736200	Weak transcription	Ovary	ovary
11	chr10:5735200-5736200	Enhancers	Thymus	Thymus
12	chr10:5735200-5736400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:5735200-5736400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr10:5735200-5736400	Enhancers	Duodenum Mucosa	Duodenum
15	chr10:5735200-5736400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr10:5735200-5736400	Enhancers	Fetal Thymus	thymus
17	chr10:5735200-5736600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:5735200-5736600	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr10:5735200-5736800	Enhancers	Primary B cells from peripheral blood	blood
20	chr10:5735200-5736800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr10:5735200-5736800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:5735200-5736800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr10:5735200-5737000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr10:5735200-5737000	Enhancers	Brain Substantia Nigra	brain
25	chr10:5735200-5737200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr10:5735200-5737400	Enhancers	Primary B cells from cord blood	blood
27	chr10:5735200-5737600	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr10:5735200-5737600	Weak transcription	Dnd41	blood
29	chr10:5735200-5737800	Weak transcription	Psoas Muscle	Psoas
30	chr10:5735200-5738800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:5735200-5739000	Weak transcription	Fetal Intestine Large	intestine
32	chr10:5735200-5739400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:5735200-5739400	Weak transcription	Lung	lung
34	chr10:5735200-5739400	Weak transcription	Pancreas	Pancrea
35	chr10:5735200-5739800	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr10:5735200-5743000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:5735200-5749000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:5735200-5750600	Weak transcription	Gastric	stomach
39	chr10:5735200-5767000	Weak transcription	Fetal Muscle Leg	muscle
40	chr10:5735400-5736000	Enhancers	Fetal Kidney	kidney
41	chr10:5735400-5736200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:5735400-5736200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:5735400-5736200	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr10:5735400-5736200	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr10:5735400-5736200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:5735400-5736200	Enhancers	Primary T cells from cord blood	blood
47	chr10:5735400-5736200	Enhancers	Brain Angular Gyrus	brain
48	chr10:5735400-5736200	Weak transcription	Brain Anterior Caudate	brain
49	chr10:5735400-5736200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:5735400-5736200	Enhancers	Colon Smooth Muscle	Colon

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