Variant report

Variant	rs70994539
Chromosome Location	chr6:11701227-11701228
allele	-/TAATAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1083580	chr6:11701226-11701232	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11686600-11701400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:11686600-11702400	Weak transcription	HSMMtube	muscle
3	chr6:11688800-11711000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:11689800-11702000	Weak transcription	HSMM	muscle
5	chr6:11700200-11701800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr6:11700200-11703400	Enhancers	NHEK	skin
7	chr6:11700400-11701800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:11700400-11702600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:11700600-11702000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:11700600-11702000	Weak transcription	GM12878-XiMat	blood
11	chr6:11700600-11702200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:11700600-11702200	Weak transcription	A549	lung
13	chr6:11701000-11707200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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