Variant report

Variant	rs7101609
Chromosome Location	chr11:92623493-92623494
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7118248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043861	chr11:92357570-92689868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv898175	chr11:92623349-92668826	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92601800-92623800	Weak transcription	Brain Anterior Caudate	brain
2	chr11:92610800-92626600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:92612800-92624000	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:92613400-92626600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:92614000-92629400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:92616600-92624000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:92616800-92630600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:92617200-92625800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:92619400-92624400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:92619400-92625200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:92619600-92625600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:92619600-92626000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:92619600-92626600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:92620000-92629200	Weak transcription	Fetal Brain Male	brain
15	chr11:92620200-92628200	Weak transcription	Brain Germinal Matrix	brain
16	chr11:92620400-92625400	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:92622200-92630800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:92622400-92631000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:92622800-92624600	Strong transcription	Fetal Brain Female	brain
20	chr11:92623000-92624400	Genic enhancers	Fetal Lung	lung
21	chr11:92623200-92624400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:92623200-92624400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:92623200-92624400	Strong transcription	Aorta	Aorta
24	chr11:92623200-92624400	Strong transcription	Fetal Stomach	stomach
25	chr11:92623200-92624800	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr11:92623400-92624000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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