Variant report

Variant	rs7102253
Chromosome Location	chr11:72792697-72792698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72782635..72785353-chr11:72791682..72794185,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STARD10-3	chr11:72792116-72793219	expReg_chr11_7220_-

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11235620	0.87[ASN][1000 genomes]
rs12294037	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12419915	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1612659	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2187494	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2366256	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3862796	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4394861	0.89[EUR][1000 genomes]
rs4400839	0.85[ASN][1000 genomes]
rs593753	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592505	0.87[ASN][1000 genomes]
rs6592509	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592510	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7124723	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7102253	STARD10	cis	Whole Blood	GTEx

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72746600-72824600	Weak transcription	Thymus	Thymus
2	chr11:72764200-72824600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:72768800-72797000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:72771600-72799400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:72773000-72810800	Weak transcription	Fetal Stomach	stomach
6	chr11:72773400-72810400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:72782600-72825200	Weak transcription	Lung	lung
8	chr11:72783200-72798800	Weak transcription	Left Ventricle	heart
9	chr11:72784200-72797800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:72784200-72798800	Weak transcription	Right Ventricle	heart
11	chr11:72784200-72799000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:72784400-72797800	Weak transcription	Brain Substantia Nigra	brain
13	chr11:72784400-72806400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:72784600-72794800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr11:72784600-72795000	Weak transcription	HMEC	breast
16	chr11:72784600-72796200	Weak transcription	Ovary	ovary
17	chr11:72784600-72798000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:72784600-72798800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:72784600-72799000	Weak transcription	Hela-S3	cervix
20	chr11:72784600-72806400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:72784600-72810800	Weak transcription	Aorta	Aorta
22	chr11:72784600-72812000	Weak transcription	NHEK	skin
23	chr11:72784800-72795600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:72785000-72796400	Weak transcription	Brain Angular Gyrus	brain
25	chr11:72785000-72811000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:72785200-72806600	Weak transcription	Osteobl	bone
27	chr11:72785200-72810600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:72786000-72804600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr11:72786200-72823600	Weak transcription	Placenta	Placenta
30	chr11:72786400-72796400	Weak transcription	HepG2	liver
31	chr11:72786600-72793200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:72786600-72798800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:72788200-72825400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:72789000-72793800	Weak transcription	HUVEC	blood vessel
35	chr11:72789000-72794800	Weak transcription	Fetal Kidney	kidney
36	chr11:72789200-72794200	Weak transcription	Primary T cells from cord blood	blood
37	chr11:72789200-72795400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:72789200-72796200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:72789200-72796400	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:72789200-72802200	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:72789200-72806000	Weak transcription	Adipose Nuclei	Adipose
42	chr11:72789200-72806600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr11:72789200-72825000	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:72789200-72825200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:72789400-72795600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:72789400-72796000	Strong transcription	Primary B cells from cord blood	blood
47	chr11:72789400-72796400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:72789400-72796400	Weak transcription	A549	lung
49	chr11:72789400-72797000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr11:72789400-72806200	Weak transcription	Fetal Heart	heart

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