Variant report

Variant	rs7102884
Chromosome Location	chr11:108536539-108536540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107897375..107899076-chr11:108535874..108537676,2	K562	blood:
2	chr11:107879617..107881507-chr11:108535769..108537352,2	K562	blood:
3	chr11:108093199..108095517-chr11:108534185..108536757,3	K562	blood:
4	chr11:108093199..108095517-chr11:108534185..108536757,4	K562	blood:

Variant related genes	Relation type
ENSG00000149311	Chromatin interaction
ENSG00000166266	Chromatin interaction
ENSG00000149308	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7130714	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108535200-108536600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:108535200-108536600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr11:108535200-108536600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:108535200-108536600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:108535200-108536600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:108535200-108536600	Active TSS	Aorta	Aorta
7	chr11:108535200-108536600	Active TSS	Brain Cingulate Gyrus	brain
8	chr11:108535200-108536600	Active TSS	Fetal Lung	lung
9	chr11:108535200-108536600	Active TSS	Left Ventricle	heart
10	chr11:108535200-108536600	Active TSS	Ovary	ovary
11	chr11:108535200-108536600	Active TSS	Right Atrium	heart
12	chr11:108535200-108536600	Active TSS	Right Ventricle	heart
13	chr11:108535200-108536600	Active TSS	K562	blood
14	chr11:108535200-108536600	Active TSS	NHLF	lung
15	chr11:108535200-108536800	Active TSS	Fetal Muscle Trunk	muscle
16	chr11:108535200-108537000	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr11:108535200-108537000	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr11:108535200-108537000	Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr11:108535200-108537000	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr11:108535200-108537000	Active TSS	HSMMtube	muscle
21	chr11:108535200-108537200	Active TSS	Psoas Muscle	Psoas
22	chr11:108535200-108537200	Active TSS	A549	lung
23	chr11:108535200-108538400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:108535400-108536600	Active TSS	H9 Cell Line	embryonic stem cell
25	chr11:108535400-108536600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:108535400-108536600	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr11:108535400-108536600	Active TSS	Brain Substantia Nigra	brain
28	chr11:108535400-108536600	Active TSS	Esophagus	oesophagus
29	chr11:108535400-108536600	Active TSS	Lung	lung
30	chr11:108535400-108536600	Active TSS	Pancreas	Pancrea
31	chr11:108535400-108536600	Active TSS	Thymus	Thymus
32	chr11:108535400-108536600	Active TSS	HepG2	liver
33	chr11:108535400-108536800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:108535400-108536800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:108535400-108537200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:108535600-108536600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:108535600-108536600	Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr11:108535600-108536800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:108535600-108537000	Active TSS	NH-A	brain
40	chr11:108535600-108537200	Active TSS	GM12878-XiMat	blood
41	chr11:108535600-108537400	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr11:108535800-108536600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr11:108535800-108536600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:108535800-108536600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:108535800-108536600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:108535800-108536600	Active TSS	Small Intestine	intestine
47	chr11:108536000-108536600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr11:108536000-108536800	Flanking Active TSS	Primary B cells from cord blood	blood
49	chr11:108536000-108536800	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr11:108536000-108536800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood

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