Variant report

Variant	rs7104106
Chromosome Location	chr11:59956760-59956761
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11821697	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828298	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34296021	1.00[AMR][1000 genomes]
rs57715813	1.00[AMR][1000 genomes]
rs7114016	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483239	1.00[AMR][1000 genomes]
rs73487292	1.00[AMR][1000 genomes]
rs73489246	1.00[AMR][1000 genomes]
rs7935575	1.00[AMR][1000 genomes]
rs7939001	1.00[AMR][1000 genomes]
rs7946886	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59950800-59961200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:59951600-59957400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:59954400-59956800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:59954600-59957200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr11:59954600-59961000	Weak transcription	Fetal Intestine Large	intestine
6	chr11:59955600-59956800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:59956000-59957000	Enhancers	Primary B cells from cord blood	blood
8	chr11:59956000-59957200	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:59956400-59960200	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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