Variant report

Variant	rs7104244
Chromosome Location	chr11:19229878-19229879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11025060	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286042	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58560650	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7929555	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946146	0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951347	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1041249	chr11:19229878-19248268	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19222600-19231000	Weak transcription	Gastric	stomach
2	chr11:19223600-19230600	Weak transcription	Psoas Muscle	Psoas
3	chr11:19224200-19230000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:19224800-19230400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:19225000-19230400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:19227000-19230400	Enhancers	Fetal Heart	heart
7	chr11:19228600-19231200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:19229200-19231000	Weak transcription	Right Atrium	heart
9	chr11:19229200-19231200	Weak transcription	Right Ventricle	heart
10	chr11:19229400-19240200	Weak transcription	Left Ventricle	heart
11	chr11:19229400-19244800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:19229600-19230000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:19229600-19245000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:19229800-19230600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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