Variant report

Variant	rs7104335
Chromosome Location	chr11:34257577-34257578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34256786..34259420-chr11:34262602..34265053,3	K562	blood:
2	chr11:34257238..34258836-chr11:34262928..34265413,2	MCF-7	breast:
3	chr11:34229441..34231710-chr11:34255472..34258756,3	MCF-7	breast:
4	chr11:34256033..34257760-chr11:34260641..34262431,2	K562	blood:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11032568	0.84[AFR][1000 genomes]
rs11032569	0.84[AFR][1000 genomes]
rs11032570	0.86[CEU][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs2611095	0.91[EUR][1000 genomes]
rs6484702	0.90[CEU][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7106936	0.84[AFR][1000 genomes]
rs7119546	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1050413	chr11:34237529-34259820	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv897204	chr11:34248229-34271712	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34245200-34263800	Weak transcription	Right Atrium	heart
2	chr11:34245200-34264200	Weak transcription	Aorta	Aorta
3	chr11:34245600-34263600	Weak transcription	Right Ventricle	heart
4	chr11:34249600-34263600	Weak transcription	Gastric	stomach
5	chr11:34254600-34258800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:34254800-34257600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr11:34255000-34257600	Enhancers	Fetal Thymus	thymus
8	chr11:34255400-34257600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:34255400-34257600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr11:34255400-34257800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:34255400-34258200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr11:34255400-34258600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:34255600-34257600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:34255600-34257800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:34255600-34258800	Enhancers	K562	blood
16	chr11:34255800-34258200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:34255800-34258600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:34256000-34257600	Enhancers	Duodenum Mucosa	Duodenum
19	chr11:34256000-34263800	Weak transcription	Colonic Mucosa	Colon
20	chr11:34256000-34270600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:34256200-34257800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:34256200-34257800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:34256200-34258600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr11:34256200-34258600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr11:34256200-34258600	Enhancers	A549	lung
26	chr11:34256200-34258800	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr11:34256200-34258800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr11:34256200-34258800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr11:34256200-34259800	Weak transcription	HSMM	muscle
30	chr11:34256200-34261200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:34256200-34263400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:34256200-34263400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:34256200-34263400	Weak transcription	HSMMtube	muscle
34	chr11:34256200-34263600	Weak transcription	Left Ventricle	heart
35	chr11:34256200-34266800	Weak transcription	Spleen	Spleen
36	chr11:34256200-34267200	Weak transcription	Psoas Muscle	Psoas
37	chr11:34256400-34257800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:34256400-34258600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr11:34256400-34261200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr11:34256400-34265400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr11:34256400-34265600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:34256600-34257600	Enhancers	Brain Anterior Caudate	brain
43	chr11:34256800-34257600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:34256800-34257600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr11:34256800-34257600	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr11:34257000-34257600	Enhancers	Brain Angular Gyrus	brain
47	chr11:34257000-34257600	Enhancers	Brain Hippocampus Middle	brain
48	chr11:34257000-34257600	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr11:34257000-34258200	Enhancers	Placenta	Placenta
50	chr11:34257200-34257800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links