Variant report
Variant | rs7104625 |
---|---|
Chromosome Location | chr11:86997305-86997306 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000174804 | Chromatin interaction |
ENSG00000246523 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1011301 | 0.86[ASN][1000 genomes] |
rs10128621 | 0.82[ASN][1000 genomes] |
rs10444376 | 0.82[ASN][1000 genomes] |
rs10444377 | 0.82[ASN][1000 genomes] |
rs10444382 | 0.82[ASN][1000 genomes] |
rs10444383 | 0.82[ASN][1000 genomes] |
rs10792931 | 0.84[ASN][1000 genomes] |
rs10792932 | 0.84[ASN][1000 genomes] |
rs10792933 | 0.86[ASN][1000 genomes] |
rs10792934 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10898648 | 0.86[ASN][1000 genomes] |
rs10898650 | 0.86[ASN][1000 genomes] |
rs10898651 | 0.86[ASN][1000 genomes] |
rs10898652 | 0.86[ASN][1000 genomes] |
rs10898654 | 0.86[ASN][1000 genomes] |
rs10898655 | 0.86[ASN][1000 genomes] |
rs10898656 | 0.86[ASN][1000 genomes] |
rs10898657 | 0.86[ASN][1000 genomes] |
rs10898658 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10898659 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10898661 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11235049 | 0.82[ASN][1000 genomes] |
rs11235050 | 0.82[ASN][1000 genomes] |
rs11235051 | 0.82[ASN][1000 genomes] |
rs11235052 | 0.82[ASN][1000 genomes] |
rs11235053 | 0.82[ASN][1000 genomes] |
rs11235055 | 0.82[ASN][1000 genomes] |
rs11235057 | 0.82[ASN][1000 genomes] |
rs11235060 | 0.82[ASN][1000 genomes] |
rs11235073 | 0.81[ASN][1000 genomes] |
rs11235074 | 0.86[ASN][1000 genomes] |
rs11235075 | 0.86[ASN][1000 genomes] |
rs11235078 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12271067 | 0.82[ASN][1000 genomes] |
rs12274870 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12276482 | 0.82[ASN][1000 genomes] |
rs12278867 | 0.82[ASN][1000 genomes] |
rs12280253 | 0.86[ASN][1000 genomes] |
rs12284040 | 0.82[ASN][1000 genomes] |
rs12284102 | 0.82[ASN][1000 genomes] |
rs12289521 | 0.86[ASN][1000 genomes] |
rs12290427 | 0.86[ASN][1000 genomes] |
rs12290541 | 0.86[ASN][1000 genomes] |
rs12290556 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12293231 | 0.86[ASN][1000 genomes] |
rs12294196 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12295149 | 0.86[ASN][1000 genomes] |
rs12363622 | 0.82[ASN][1000 genomes] |
rs17821231 | 0.82[ASN][1000 genomes] |
rs2054913 | 0.86[ASN][1000 genomes] |
rs2054914 | 0.86[ASN][1000 genomes] |
rs2054915 | 0.86[ASN][1000 genomes] |
rs2054916 | 0.86[ASN][1000 genomes] |
rs36024012 | 0.82[ASN][1000 genomes] |
rs4281497 | 0.86[ASN][1000 genomes] |
rs4337063 | 0.86[ASN][1000 genomes] |
rs4456273 | 0.86[ASN][1000 genomes] |
rs4943978 | 0.82[ASN][1000 genomes] |
rs4943979 | 0.86[ASN][1000 genomes] |
rs4943980 | 0.86[ASN][1000 genomes] |
rs4944686 | 0.82[ASN][1000 genomes] |
rs4944687 | 0.82[ASN][1000 genomes] |
rs4944688 | 0.82[ASN][1000 genomes] |
rs4944693 | 0.84[ASN][1000 genomes] |
rs4944694 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4944695 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs61904503 | 0.82[ASN][1000 genomes] |
rs6592343 | 0.86[ASN][1000 genomes] |
rs6592344 | 0.86[ASN][1000 genomes] |
rs6592345 | 0.86[ASN][1000 genomes] |
rs7101863 | 0.86[ASN][1000 genomes] |
rs7102378 | 0.82[ASN][1000 genomes] |
rs7111133 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7113000 | 0.82[ASN][1000 genomes] |
rs7114515 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7114982 | 0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7115293 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7115516 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7117687 | 0.86[ASN][1000 genomes] |
rs7117839 | 0.86[ASN][1000 genomes] |
rs7118029 | 0.82[ASN][1000 genomes] |
rs7118674 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7119714 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7126948 | 0.82[ASN][1000 genomes] |
rs7127921 | 0.86[ASN][1000 genomes] |
rs7128657 | 0.86[ASN][1000 genomes] |
rs7128894 | 0.86[ASN][1000 genomes] |
rs7130295 | 0.82[ASN][1000 genomes] |
rs7131357 | 0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7928759 | 0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7935859 | 0.82[ASN][1000 genomes] |
rs7936587 | 0.82[ASN][1000 genomes] |
rs7939286 | 0.82[ASN][1000 genomes] |
rs7945047 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7945472 | 0.81[EUR][1000 genomes] |
rs7945575 | 0.86[ASN][1000 genomes] |
rs7951097 | 0.82[ASN][1000 genomes] |
rs7952272 | 0.82[ASN][1000 genomes] |
rs7952287 | 0.82[ASN][1000 genomes] |
rs7952406 | 0.82[ASN][1000 genomes] |
rs7952708 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1043562 | chr11:86755535-87547185 | Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
2 | nsv541120 | chr11:86755535-87547185 | Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
3 | nsv1046288 | chr11:86757573-87158571 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
4 | nsv1045057 | chr11:86794670-87033779 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
5 | nsv541121 | chr11:86794670-87033779 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv898064 | chr11:86864277-87013438 | Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | esv2829956 | chr11:86872504-87025059 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
8 | nsv468779 | chr11:86928253-87001892 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
9 | nsv555709 | chr11:86928253-87001892 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
10 | nsv898068 | chr11:86930270-87005969 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
11 | nsv555710 | chr11:86947024-87001892 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
12 | nsv555711 | chr11:86960516-87001892 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
13 | nsv555712 | chr11:86961994-87007030 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
14 | nsv898071 | chr11:86963330-87001892 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
15 | nsv898072 | chr11:86963330-87005969 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
16 | nsv898073 | chr11:86963330-87013438 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
17 | nsv898074 | chr11:86963330-87034696 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | n/a |
18 | nsv555713 | chr11:86971548-87013438 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:86991600-87014200 | Weak transcription | HepG2 | liver |
2 | chr11:86992000-87017600 | Weak transcription | Aorta | Aorta |
3 | chr11:86992600-87020600 | Weak transcription | Liver | Liver |
4 | chr11:86993000-87001600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
5 | chr11:86993200-87009000 | Weak transcription | HUVEC | blood vessel |
6 | chr11:86994000-87014200 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
7 | chr11:86995200-87018800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
8 | chr11:86995600-86999800 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
9 | chr11:86995800-87007200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
10 | chr11:86996400-86997800 | Strong transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
11 | chr11:86996800-86997400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
12 | chr11:86996800-86997400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
13 | chr11:86996800-87004400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
14 | chr11:86996800-87010200 | Weak transcription | K562 | blood |
15 | chr11:86996800-87013000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
16 | chr11:86997000-86997400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |