Variant report

Variant	rs7104814
Chromosome Location	chr11:58045080-58045081
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10750894	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10750895	0.89[ASN][1000 genomes]
rs10750898	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10792159	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792165	0.87[ASN][1000 genomes]
rs10896736	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896738	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896742	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896749	0.89[ASN][1000 genomes]
rs10896755	0.87[ASN][1000 genomes]
rs10896760	0.87[ASN][1000 genomes]
rs10896761	0.87[ASN][1000 genomes]
rs10896774	0.84[ASN][1000 genomes]
rs10896775	0.83[ASN][1000 genomes]
rs11229333	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11229349	0.81[ASN][1000 genomes]
rs11229353	0.89[ASN][1000 genomes]
rs11229355	0.89[ASN][1000 genomes]
rs11229365	0.89[ASN][1000 genomes]
rs11229366	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11229396	0.84[ASN][1000 genomes]
rs11229397	0.84[ASN][1000 genomes]
rs11607488	0.84[ASN][1000 genomes]
rs12269745	0.84[ASN][1000 genomes]
rs12274866	0.84[ASN][1000 genomes]
rs12278357	0.84[ASN][1000 genomes]
rs12283414	0.84[ASN][1000 genomes]
rs12285111	0.82[ASN][1000 genomes]
rs12286421	0.84[ASN][1000 genomes]
rs12289198	0.84[ASN][1000 genomes]
rs12290089	0.84[ASN][1000 genomes]
rs12291551	0.84[ASN][1000 genomes]
rs12294062	0.80[ASN][1000 genomes]
rs12575804	0.84[ASN][1000 genomes]
rs12786744	0.84[ASN][1000 genomes]
rs12788786	0.84[ASN][1000 genomes]
rs12789701	0.84[ASN][1000 genomes]
rs12797488	0.84[ASN][1000 genomes]
rs12798255	0.84[ASN][1000 genomes]
rs12802819	0.84[ASN][1000 genomes]
rs12802960	0.84[ASN][1000 genomes]
rs12803648	0.84[ASN][1000 genomes]
rs12804134	0.84[ASN][1000 genomes]
rs17474373	0.82[ASN][1000 genomes]
rs1938637	0.87[ASN][1000 genomes]
rs1938646	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1938647	0.89[ASN][1000 genomes]
rs1938657	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1938658	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1938662	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1938663	0.89[ASN][1000 genomes]
rs1938664	0.89[ASN][1000 genomes]
rs1986404	0.82[ASN][1000 genomes]
rs2000486	0.89[ASN][1000 genomes]
rs2003231	0.84[ASN][1000 genomes]
rs2186407	0.86[ASN][1000 genomes]
rs2226414	0.87[ASN][1000 genomes]
rs35279927	0.82[ASN][1000 genomes]
rs35542119	0.84[ASN][1000 genomes]
rs3887001	0.89[ASN][1000 genomes]
rs4085405	0.87[ASN][1000 genomes]
rs4127345	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4127346	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4127348	0.89[ASN][1000 genomes]
rs4127353	0.87[ASN][1000 genomes]
rs4288769	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4323891	0.87[ASN][1000 genomes]
rs4347409	0.84[ASN][1000 genomes]
rs4439529	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4439530	0.88[ASN][1000 genomes]
rs4506677	0.82[ASN][1000 genomes]
rs4517537	0.82[ASN][1000 genomes]
rs4519112	0.83[ASN][1000 genomes]
rs4544018	0.88[ASN][1000 genomes]
rs4561231	0.87[ASN][1000 genomes]
rs4579945	0.82[ASN][1000 genomes]
rs4611223	0.92[ASN][1000 genomes]
rs4611224	0.89[ASN][1000 genomes]
rs61902844	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6591469	0.89[ASN][1000 genomes]
rs6591475	0.82[ASN][1000 genomes]
rs7101864	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7102222	0.89[ASN][1000 genomes]
rs7102784	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110266	0.89[ASN][1000 genomes]
rs7112578	0.84[ASN][1000 genomes]
rs7117244	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7127035	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs734776	0.87[ASN][1000 genomes]
rs754681	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7926741	0.87[ASN][1000 genomes]
rs7931394	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58044600-58059600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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