Variant report

Variant	rs7105686
Chromosome Location	chr11:102598941-102598942
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:102598699-102599044	MCF10A-Er-Src	breast:	n/a	chr11:102598850-102598859 chr11:102598849-102598860
2	JUND	chr11:102598604-102599162	SK-N-SH	brain:	n/a	chr11:102598850-102598859
3	FOS	chr11:102598644-102599045	MCF10A-Er-Src	breast:	n/a	chr11:102598850-102598859 chr11:102598849-102598860
4	FOSL2	chr11:102598586-102599101	SK-N-SH	brain:	n/a	chr11:102598850-102598859
5	JUN	chr11:102598467-102599046	HUVEC	blood vessel:	n/a	chr11:102598850-102598859
6	POLR2A	chr11:102598712-102599007	HUVEC	blood vessel:	n/a	n/a
7	E2F4	chr11:102598715-102599045	MCF10A-Er-Src	breast:	n/a	chr11:102599035-102599044
8	JUND	chr11:102598514-102599174	SK-N-SH	brain:	n/a	chr11:102598850-102598859
9	FOS	chr11:102598555-102599084	HUVEC	blood vessel:	n/a	chr11:102598850-102598859 chr11:102598849-102598860
10	FOS	chr11:102598673-102599045	MCF10A-Er-Src	breast:	n/a	chr11:102598850-102598859 chr11:102598849-102598860
11	SPI1	chr11:102598466-102598992	HL-60	blood:	n/a	n/a
12	CEBPB	chr11:102598504-102598971	IMR90	lung:	n/a	n/a
13	TCF12	chr11:102598547-102599135	SK-N-SH	brain:	n/a	n/a
14	FOS	chr11:102598675-102599045	MCF10A-Er-Src	breast:	n/a	chr11:102598850-102598859 chr11:102598849-102598860
15	GATA3	chr11:102598529-102599194	SK-N-SH	brain:	n/a	chr11:102598849-102598858
16	STAT3	chr11:102598748-102598948	MCF10A-Er-Src	breast:	n/a	n/a
17	PBX3	chr11:102598573-102599220	SK-N-SH	brain:	n/a	n/a
18	PBX3	chr11:102598604-102599051	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
MMP8	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10895353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895354	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895355	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758861	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4237606	0.90[ASN][1000 genomes]
rs7123682	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102596400-102601000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:102597200-102599400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:102597600-102599600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:102598200-102599000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr11:102598200-102599600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:102598200-102599600	Enhancers	NHEK	skin
7	chr11:102598200-102600000	Enhancers	HMEC	breast
8	chr11:102598200-102600000	Enhancers	NHLF	lung
9	chr11:102598200-102601400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:102598200-102601600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:102598200-102602000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:102598200-102602000	Enhancers	HUVEC	blood vessel
13	chr11:102598400-102599400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:102598400-102599400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:102598400-102600600	Enhancers	NHDF-Ad	bronchial
16	chr11:102598600-102599000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:102598600-102600000	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr11:102598800-102599400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr11:102598800-102600600	Weak transcription	Fetal Stomach	stomach
20	chr11:102598800-102601000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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