Variant report
| Variant | rs7106440 |
|---|---|
| Chromosome Location | chr11:15358676-15358677 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10832406 | 0.80[ASN][1000 genomes] |
| rs10832407 | 0.80[ASN][1000 genomes] |
| rs10832410 | 0.81[ASN][1000 genomes] |
| rs10832411 | 0.82[ASN][1000 genomes] |
| rs11023532 | 0.83[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11023534 | 0.86[ASN][1000 genomes] |
| rs11023550 | 0.82[ASN][1000 genomes] |
| rs11023551 | 0.82[ASN][1000 genomes] |
| rs11601711 | 0.80[EUR][1000 genomes] |
| rs12222004 | 0.80[ASN][1000 genomes] |
| rs3925090 | 0.82[ASN][1000 genomes] |
| rs4562813 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4757310 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4757311 | 0.82[ASN][1000 genomes] |
| rs4757312 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs57784160 | 0.80[ASN][1000 genomes] |
| rs6486241 | 0.80[ASN][1000 genomes] |
| rs7111011 | 0.82[ASN][1000 genomes] |
| rs7114823 | 0.82[ASN][1000 genomes] |
| rs7118078 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7122143 | 0.82[ASN][1000 genomes] |
| rs7130361 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2830370 | chr11:15142247-15444094 | Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv832072 | chr11:15226843-15392190 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1044103 | chr11:15345545-15390081 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3383363 | chr11:15358419-15359182 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:15356800-15358800 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
