Variant report

Variant	rs7106584
Chromosome Location	chr11:5616772-5616773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:5616771-5616821	HCM	heart:	n/a
2	chr11:5616771-5616821	HCT-116	colon:	n/a
3	chr11:5616771-5616821	GM12878	blood:	n/a
4	chr11:5616771-5616821	T-47D	breast:	n/a
5	chr11:5616771-5616821	HPAEpiC	pulmonary alveolar:	n/a
6	chr11:5616771-5616821	HRCEpiC	kidney:	n/a
7	chr11:5616771-5616821	MCF10A-Er-Src	breast:	n/a
8	chr11:5616771-5616821	Caco-2	colon:	n/a
9	chr11:5616771-5616821	K562	blood:	n/a
10	chr11:5616771-5616821	ECC-1	luminal epithelium:	n/a
11	chr11:5616771-5616821	GM12892	blood:	n/a
12	chr11:5616771-5616821	NH-A	brain:	n/a
13	chr11:5616771-5616821	SK-N-SH	brain:	n/a
14	chr11:5616771-5616821	HL-60	blood:	n/a
15	chr11:5616771-5616821	HIPEpiC	eye:	n/a
16	chr11:5616771-5616821	NB4	blood:	n/a
17	chr11:5616771-5616821	SKMC	muscle:	n/a
18	chr11:5616771-5616821	PFSK-1	brain:	n/a
19	chr11:5616771-5616821	AG04449	skin:	fetal
20	chr11:5616771-5616821	SAEC	small airway:	n/a
21	chr11:5616771-5616821	HEEpiC	esophagus:	n/a
22	chr11:5616771-5616821	Hela-S3	cervix:	n/a
23	chr11:5616771-5616821	BE2_C	brain:	n/a
24	chr11:5616771-5616821	NT2-D1	testis:	n/a
25	chr11:5616771-5616821	AG09309	skin:	n/a
26	chr11:5616771-5616821	SK-N-MC	brain:	n/a
27	chr11:5616771-5616821	HEK293	kidney:	embryo
28	chr11:5616771-5616821	HMEC	breast:	n/a
29	chr11:5616771-5616821	IMR90	lung:	fetal
30	chr11:5616771-5616821	BJ	skin:	n/a
31	chr11:5616771-5616821	HAEpiC	amniotic membrane:	n/a
32	chr11:5616771-5616821	ovcar-3	ovarian:	n/a
33	chr11:5616771-5616821	H1-hESC	embryonic stem cell:	embryo
34	chr11:5616771-5616821	A549	lung:	n/a
35	chr11:5616771-5616821	AoSMC	blood vessel:	n/a
36	chr11:5616771-5616821	U87	brain:	n/a
37	chr11:5616771-5616821	NHBE	bronchial:	n/a
38	chr11:5616771-5616821	AG10803	skin:	n/a
39	chr11:5616771-5616821	NHDF-neo	bronchial:	n/a
40	chr11:5616771-5616821	HCPEpiC	choroid plexus:	n/a
41	chr11:5616771-5616821	GM06990	blood:	n/a
42	chr11:5616771-5616821	RPTEC	kidney:	n/a
43	chr11:5616771-5616821	MCF-7	breast:	n/a
44	chr11:5616771-5616821	GM19239	blood:	n/a
45	chr11:5616771-5616821	LNCaP	prostate:	n/a
46	chr11:5616771-5616821	HUVEC	blood vessel:	n/a
47	chr11:5616771-5616821	AG04450	lung:	fetal
48	chr11:5616771-5616821	HRE	kidney:	n/a
49	chr11:5616771-5616821	ProgFib	skin:	n/a
50	chr11:5616771-5616821	Hepatocyte	liver:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:5524418..5526007-chr11:5615212..5617333,2	K562	blood:

No data

Variant related genes	Relation type
TRIM6	CpG island
TRIM6-TRIM34	CpG island

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10838406	0.86[ASW][hapmap]
rs1368694	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048608	chr11:5328516-5645179	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
2	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv896939	chr11:5497799-5809548	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
5	nsv896943	chr11:5583188-5619008	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1041568	chr11:5585716-5765688	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv896944	chr11:5588174-5625603	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv896945	chr11:5598864-5625603	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1054035	chr11:5604437-5620417	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	esv2760210	chr11:5604437-5620429	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv1048455	chr11:5609783-5655393	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1053414	chr11:5612989-6030212	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7106584	UBQLNL	cis	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5611600-5617200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:5614000-5617200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:5615000-5617400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:5615200-5617200	Weak transcription	Right Atrium	heart
5	chr11:5615200-5617600	Weak transcription	NH-A	brain
6	chr11:5616000-5617200	Enhancers	K562	blood
7	chr11:5616200-5616800	Enhancers	A549	lung
8	chr11:5616400-5616800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:5616400-5617000	Weak transcription	Adipose Nuclei	Adipose
10	chr11:5616400-5617000	Weak transcription	Spleen	Spleen
11	chr11:5616600-5617000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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