Variant report

Variant	rs7106603
Chromosome Location	chr11:100587092-100587093
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100578654..100584539-chr11:100585758..100591241,5	K562	blood:
2	chr11:100582193..100584902-chr11:100585301..100588022,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10128687	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10431108	0.97[ASN][1000 genomes]
rs10895009	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895011	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11224403	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11224417	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1144128	0.83[YRI][hapmap]
rs1216743	0.88[ASN][1000 genomes]
rs12269905	0.89[ASN][1000 genomes]
rs12286062	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12288075	0.89[ASN][1000 genomes]
rs12291493	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1502284	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1847149	0.95[ASN][1000 genomes]
rs1847150	0.95[ASN][1000 genomes]
rs2055449	0.83[ASN][1000 genomes]
rs2055450	0.85[ASN][1000 genomes]
rs2298609	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4312035	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs4495864	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4753980	0.81[ASN][1000 genomes]
rs4753982	0.81[AFR][1000 genomes]
rs4753984	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4754695	0.96[ASN][1000 genomes]
rs4754696	0.81[AFR][1000 genomes]
rs4754697	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4754698	0.88[ASN][1000 genomes]
rs486023	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs492237	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs598369	0.83[YRI][hapmap]
rs604723	0.94[ASN][1000 genomes]
rs607562	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs633185	0.94[ASN][1000 genomes]
rs653320	0.87[ASN][1000 genomes]
rs6590805	0.81[ASN][1000 genomes]
rs6590810	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6590811	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6590812	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6590813	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6590814	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6590816	0.83[ASN][1000 genomes]
rs6590817	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs667575	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs670401	0.87[ASN][1000 genomes]
rs7103397	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7105451	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7112041	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7114867	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7125452	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7130275	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7926526	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7928576	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7928871	0.85[ASN][1000 genomes]
rs7930157	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7938194	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7938601	0.85[ASN][1000 genomes]
rs7946913	0.89[AFR][1000 genomes]
rs7952055	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9919648	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053430	chr11:99888390-100629136	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1042067	chr11:99889697-100629136	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1037689	chr11:99895378-100624599	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1040942	chr11:99895378-100629136	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1039852	chr11:99901695-100610533	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv541152	chr11:99901695-100610533	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1045190	chr11:99913193-100627395	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv541153	chr11:99913193-100627395	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv529454	chr11:99913394-100627255	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv1043022	chr11:100387466-100610533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv832246	chr11:100426725-100606957	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv898327	chr11:100569021-100631075	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100561000-100590200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:100561000-100590600	Weak transcription	Lung	lung
3	chr11:100566800-100590000	Weak transcription	Fetal Stomach	stomach
4	chr11:100572400-100590000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:100572400-100590200	Weak transcription	Placenta	Placenta
6	chr11:100575200-100590000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:100575400-100587200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:100575400-100590200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:100576200-100590200	Weak transcription	Small Intestine	intestine
10	chr11:100576800-100587600	Weak transcription	Primary B cells from cord blood	blood
11	chr11:100580200-100590200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:100580800-100589800	Weak transcription	Fetal Heart	heart
13	chr11:100581000-100589800	Weak transcription	HSMMtube	muscle
14	chr11:100581000-100590000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:100583600-100590000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:100583800-100589800	Weak transcription	Liver	Liver
17	chr11:100584200-100589000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:100584200-100590000	Weak transcription	Fetal Intestine Small	intestine
19	chr11:100584200-100590200	Weak transcription	Fetal Intestine Large	intestine
20	chr11:100584600-100588800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:100585400-100590200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:100585600-100589800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:100585800-100588000	Enhancers	NHDF-Ad	bronchial
24	chr11:100585800-100590200	Weak transcription	Right Ventricle	heart
25	chr11:100586000-100588000	Enhancers	GM12878-XiMat	blood
26	chr11:100586200-100588800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:100586200-100589000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:100586200-100589800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr11:100586400-100589000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:100586400-100589800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:100586400-100590000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:100586400-100590000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:100586400-100590000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:100586400-100590000	Weak transcription	HUVEC	blood vessel
35	chr11:100586400-100590200	Weak transcription	Right Atrium	heart
36	chr11:100586400-100590600	Weak transcription	Fetal Kidney	kidney
37	chr11:100586600-100587600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:100586600-100589800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:100586600-100590000	Weak transcription	Psoas Muscle	Psoas
40	chr11:100586800-100588200	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr11:100586800-100588800	Weak transcription	A549	lung
42	chr11:100586800-100590000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:100586800-100590000	Weak transcription	Fetal Muscle Leg	muscle
44	chr11:100586800-100590000	Weak transcription	Left Ventricle	heart
45	chr11:100586800-100590200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:100586800-100590200	Weak transcription	Spleen	Spleen
47	chr11:100587000-100587400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr11:100587000-100589800	Weak transcription	Adipose Nuclei	Adipose
49	chr11:100587000-100589800	Weak transcription	NHLF	lung
50	chr11:100587000-100590000	Weak transcription	H9 Cell Line	embryonic stem cell

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