Variant report

Variant	rs7106682
Chromosome Location	chr11:85566966-85566967
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr11:85565372-85567017	SK-N-SH	brain:	n/a	chr11:85566056-85566063 chr11:85566414-85566422 chr11:85566056-85566070

No.	Distal block	Cell Line	Cell type
1	chr11:85566679..85569060-chr11:85698600..85700675,2	K562	blood:
2	chr11:85564358..85567668-chr11:85954757..85957283,3	MCF-7	breast:
3	chr11:85520161..85523649-chr11:85564385..85567428,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215504	TF binding region
ENSG00000074266	Chromatin interaction
ENSG00000137501	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10898421	0.89[AMR][1000 genomes]
rs11234454	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1445506	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4534603	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7105086	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7119725	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1047147	chr11:85459235-85594800	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv541114	chr11:85459235-85594800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
10	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
11	nsv898051	chr11:85554057-85620823	Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85565400-85567000	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr11:85565400-85567000	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr11:85566400-85567000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:85566400-85567000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:85566400-85567000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:85566400-85567200	Enhancers	HepG2	liver
7	chr11:85566600-85567000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:85566600-85567000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr11:85566600-85567000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr11:85566600-85567000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr11:85566600-85567000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:85566600-85567000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr11:85566600-85567000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:85566600-85567000	Enhancers	Rectal Smooth Muscle	rectum
15	chr11:85566600-85567000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:85566600-85567000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:85566600-85567000	Enhancers	NHDF-Ad	bronchial
18	chr11:85566600-85567200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:85566600-85567200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr11:85566600-85567400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:85566600-85568600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:85566800-85567000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr11:85566800-85567000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr11:85566800-85567000	Enhancers	H9 Cell Line	embryonic stem cell
25	chr11:85566800-85567000	Enhancers	Fetal Heart	heart
26	chr11:85566800-85567400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:85566800-85568000	Weak transcription	Spleen	Spleen
28	chr11:85566800-85569200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:85566800-85570200	Weak transcription	Esophagus	oesophagus

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