Variant report

Variant	rs7106930
Chromosome Location	chr11:107962020-107962021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107959572..107962405-chr11:107962851..107965555,2	MCF-7	breast:
2	chr11:107960048..107962789-chr11:107975595..107977973,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10789652	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10890810	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212486	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11212512	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11823929	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12270224	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12277368	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12418673	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803043	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs15677	0.93[EUR][1000 genomes]
rs17679325	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271853	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35583347	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3858392	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3908131	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4753827	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56214765	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67456286	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104942	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105163	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120705	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121568	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7122356	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7949655	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1039549	chr11:107950572-108034548	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107890800-107975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:107891000-107965800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:107891200-107966200	Weak transcription	Small Intestine	intestine
4	chr11:107902600-107974400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:107908200-107964000	Weak transcription	Fetal Heart	heart
6	chr11:107908400-107980600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:107923800-107965800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:107928200-107985200	Weak transcription	Psoas Muscle	Psoas
9	chr11:107938400-107968200	Weak transcription	Hela-S3	cervix
10	chr11:107941000-107971800	Weak transcription	NHEK	skin
11	chr11:107946200-107971200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:107946600-107986000	Weak transcription	Brain Angular Gyrus	brain
13	chr11:107947600-107964800	Weak transcription	K562	blood
14	chr11:107947800-107965800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:107947800-107966000	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:107951000-107965600	Weak transcription	HMEC	breast
17	chr11:107951200-107965600	Weak transcription	NHLF	lung
18	chr11:107951400-107965800	Weak transcription	Colonic Mucosa	Colon
19	chr11:107951600-107964000	Weak transcription	HUVEC	blood vessel
20	chr11:107953200-107991600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:107953400-107962200	Weak transcription	Spleen	Spleen
22	chr11:107953400-107972000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:107953600-107965600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:107953600-107986000	Weak transcription	Pancreas	Pancrea
25	chr11:107953800-107962400	Weak transcription	HSMMtube	muscle
26	chr11:107954000-107967800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:107954200-107963800	Weak transcription	A549	lung
28	chr11:107954200-107965600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:107954200-107967800	Weak transcription	HepG2	liver
30	chr11:107954600-107962400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr11:107954600-107965600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:107954600-107965600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr11:107954600-107965800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:107954600-107965800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr11:107954800-107962200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:107954800-107965400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:107954800-107972200	Weak transcription	Aorta	Aorta
38	chr11:107955000-107962400	Weak transcription	GM12878-XiMat	blood
39	chr11:107955200-107963800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr11:107955200-107964000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:107955200-107965600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:107955200-107965600	Weak transcription	Brain Anterior Caudate	brain
43	chr11:107955200-107972000	Weak transcription	Gastric	stomach
44	chr11:107955400-107965600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:107955400-107965600	Weak transcription	Fetal Brain Male	brain
46	chr11:107955600-107965400	Weak transcription	NH-A	brain
47	chr11:107955600-107965800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:107955800-107962200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:107955800-107962400	Weak transcription	Primary B cells from cord blood	blood
50	chr11:107955800-107964400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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