Variant report

Variant	rs7108105
Chromosome Location	chr11:74392341-74392342
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZKSCAN1	chr11:74392149-74392349	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74384288..74386885-chr11:74391965..74393932,2	K562	blood:
2	chr11:74390056..74393770-chr11:74396439..74399617,3	K562	blood:

Variant related genes	Relation type
RN7SKP297	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10793103	0.88[CEU][hapmap];0.89[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10899031	0.94[EUR][1000 genomes]
rs10899032	0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs10899033	0.84[CEU][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs10899034	0.83[AFR][1000 genomes]
rs2186956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34238674	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7111585	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7119296	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74372000-74393000	Weak transcription	Fetal Brain Female	brain
2	chr11:74381600-74394000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:74384200-74392400	Weak transcription	Right Ventricle	heart
4	chr11:74384400-74392600	Weak transcription	Psoas Muscle	Psoas
5	chr11:74384400-74394200	Weak transcription	Lung	lung
6	chr11:74384800-74392600	Weak transcription	Spleen	Spleen
7	chr11:74384800-74394200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:74385200-74392600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:74385200-74393000	Weak transcription	Brain Anterior Caudate	brain
10	chr11:74385200-74393400	Weak transcription	Brain Angular Gyrus	brain
11	chr11:74385200-74394400	Weak transcription	NHDF-Ad	bronchial
12	chr11:74385400-74393000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:74387000-74393000	Enhancers	Fetal Muscle Leg	muscle
14	chr11:74388800-74392400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:74390000-74395400	Weak transcription	HSMM	muscle
16	chr11:74390400-74392400	Weak transcription	A549	lung
17	chr11:74390400-74392600	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:74390400-74393600	Weak transcription	Osteobl	bone
19	chr11:74390400-74394200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:74390400-74397800	Weak transcription	K562	blood
21	chr11:74390600-74392400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:74390600-74393200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:74391200-74394200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr11:74391800-74392400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:74392000-74392600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr11:74392000-74393600	Enhancers	Gastric	stomach
27	chr11:74392200-74392400	Weak transcription	Placenta	Placenta
28	chr11:74392200-74392400	Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr11:74392200-74393000	Enhancers	Fetal Stomach	stomach
30	chr11:74392200-74393600	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr11:74392200-74394200	Enhancers	Colon Smooth Muscle	Colon
32	chr11:74392200-74394400	Enhancers	Pancreas	Pancrea
33	chr11:74392200-74395200	Enhancers	Fetal Heart	heart

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