Variant report

Variant	rs7108368
Chromosome Location	chr11:73113117-73113118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr11:73112940-73113251	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:73112182-73114764	HL-60	blood:	n/a	n/a
3	POLR2A	chr11:73112785-73113236	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr11:73112184-73113346	GM12892	blood:	n/a	n/a
5	POLR2A	chr11:73112311-73115213	GM12878	blood:	n/a	n/a
6	POLR2A	chr11:73112209-73114863	GM12878	blood:	n/a	n/a
7	POLR2A	chr11:73111228-73115333	GM12878	blood:	n/a	n/a
8	POLR2A	chr11:73112323-73114114	GM12891	blood:	n/a	n/a
9	POLR2A	chr11:73113071-73113823	GM12878	blood:	n/a	n/a
10	POLR2A	chr11:73112393-73115451	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr11:73112271-73115418	A549	lung:	n/a	n/a
12	POLR2A	chr11:73112300-73114898	K562	blood:	n/a	n/a
13	POLR2A	chr11:73112216-73113273	GM12891	blood:	n/a	n/a
14	POLR2A	chr11:73111226-73115898	GM12891	blood:	n/a	n/a
15	POLR2A	chr11:73112597-73113503	HUVEC	blood vessel:	n/a	n/a
16	POLR2A	chr11:73113018-73113192	GM12878	blood:	n/a	n/a
17	POLR2A	chr11:73112969-73113836	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr11:73112150-73114968	PFSK-1	brain:	n/a	n/a
19	POLR2A	chr11:73112234-73113258	GM12892	blood:	n/a	n/a
20	POLR2A	chr11:73112198-73114117	SK-N-MC	brain:	n/a	n/a
21	POLR2A	chr11:73112309-73114204	HL-60	blood:	n/a	n/a
22	POLR2A	chr11:73112255-73113466	GM12892	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73112642..73115479-chr11:73176315..73178999,2	MCF-7	breast:
2	chr11:73112459..73114000-chr11:73375360..73377325,2	MCF-7	breast:
3	chr11:73112653..73117037-chr11:73375086..73378284,4	MCF-7	breast:
4	chr11:73109121..73112181-chr11:73112375..73115305,3	MCF-7	breast:
5	chr11:73111799..73116221-chr11:73117237..73120913,5	K562	blood:
6	chr11:73034868..73037112-chr11:73112469..73114530,2	MCF-7	breast:
7	chr11:73106551..73108996-chr11:73110299..73113242,3	K562	blood:
8	chr11:73111818..73115266-chr11:73122319..73124692,3	K562	blood:
9	chr11:73112531..73114097-chr11:73119091..73120983,2	MCF-7	breast:
10	chr11:73086932..73087772-chr11:73112460..73113458,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000256448	TF binding region
ENSG00000252732	Chromatin interaction
ENSG00000256928	Chromatin interaction
ENSG00000054967	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7118451	1.00[CEU][hapmap]
rs9888218	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73095200-73116200	Weak transcription	Liver	Liver
2	chr11:73096200-73130200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:73097200-73117600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:73098600-73126000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:73098600-73132400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:73099200-73139800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:73099200-73141000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:73099400-73113200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:73099600-73119200	Weak transcription	Fetal Lung	lung
10	chr11:73100000-73116600	Weak transcription	Pancreas	Pancrea
11	chr11:73100000-73118400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:73100200-73117400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:73100600-73118600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:73100800-73115800	Weak transcription	HMEC	breast
15	chr11:73101000-73116200	Weak transcription	Brain Angular Gyrus	brain
16	chr11:73101000-73116400	Weak transcription	Brain Substantia Nigra	brain
17	chr11:73101200-73124800	Weak transcription	Psoas Muscle	Psoas
18	chr11:73103600-73118400	Weak transcription	Esophagus	oesophagus
19	chr11:73103800-73116600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:73104000-73116200	Weak transcription	Brain Anterior Caudate	brain
21	chr11:73104600-73113200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr11:73104600-73113200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:73104600-73114400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:73104600-73123400	Strong transcription	Fetal Stomach	stomach
25	chr11:73104800-73114000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:73104800-73122600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:73105200-73116400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:73105200-73116800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:73105600-73116000	Weak transcription	Colonic Mucosa	Colon
30	chr11:73105800-73116600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr11:73106000-73114600	Weak transcription	HepG2	liver
32	chr11:73106200-73116400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr11:73106400-73113400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr11:73106400-73116600	Weak transcription	Gastric	stomach
35	chr11:73106400-73120200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:73107000-73113800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr11:73107200-73114800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:73107200-73116200	Weak transcription	Lung	lung
39	chr11:73107800-73114000	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:73107800-73115800	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr11:73107800-73116200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:73107800-73117600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr11:73108200-73115600	Weak transcription	Hela-S3	cervix
44	chr11:73108200-73116200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:73108400-73115800	Weak transcription	Aorta	Aorta
46	chr11:73108400-73116400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:73108600-73113400	Weak transcription	A549	lung
48	chr11:73108800-73113200	Weak transcription	Primary T cells from cord blood	blood
49	chr11:73108800-73115800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr11:73109000-73114800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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