Variant report

Variant	rs7108572
Chromosome Location	chr11:34610621-34610622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1509664	1.00[AMR][1000 genomes]
rs16925838	1.00[AMR][1000 genomes]
rs16925855	1.00[AMR][1000 genomes]
rs1848746	1.00[AMR][1000 genomes]
rs1891287	1.00[AMR][1000 genomes]
rs55782719	1.00[AMR][1000 genomes]
rs56136912	1.00[AMR][1000 genomes]
rs59821482	1.00[AMR][1000 genomes]
rs60587313	1.00[AMR][1000 genomes]
rs7108716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123759	1.00[AMR][1000 genomes]
rs73446857	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897212	chr11:34523173-34621004	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7108572	CD44	cis	lymphoblastoid	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608200-34610800	Enhancers	K562	blood
2	chr11:34608200-34611800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:34608400-34611400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:34608400-34613800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:34608400-34618400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:34609200-34614200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:34609600-34611800	Weak transcription	Pancreas	Pancrea
9	chr11:34609600-34619200	Weak transcription	Fetal Heart	heart
10	chr11:34609600-34620800	Weak transcription	Esophagus	oesophagus
11	chr11:34609800-34611600	Weak transcription	NHEK	skin
12	chr11:34609800-34614000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:34609800-34616000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:34610000-34611400	Weak transcription	Hela-S3	cervix
15	chr11:34610000-34611600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:34610000-34613800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:34610200-34611400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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