Variant report

Variant	rs7108896
Chromosome Location	chr11:45870306-45870307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:45823557..45830738-chr11:45863397..45877001,19	MCF-7	breast:
2	chr11:45869438..45872196-chr11:45903876..45906831,3	K562	blood:
3	chr11:45869749..45872196-chr11:45903148..45905376,2	K562	blood:
4	chr11:45868765..45870683-chr11:45944601..45946304,2	MCF-7	breast:
5	chr11:45869552..45871506-chr11:46003139..46005373,2	K562	blood:
6	chr11:45868950..45870705-chr11:45892090..45893685,2	K562	blood:
7	chr11:45824002..45829445-chr11:45867072..45871709,12	MCF-7	breast:
8	chr11:45841387..45844353-chr11:45869079..45870612,2	MCF-7	breast:
9	chr11:45867151..45870859-chr11:45942545..45946514,4	K562	blood:
10	chr11:45859074..45860991-chr11:45869177..45870852,2	MCF-7	breast:
11	chr11:45868680..45870553-chr11:45907106..45909020,2	K562	blood:
12	chr11:45869428..45871022-chr11:45916050..45918387,2	MCF-7	breast:
13	chr11:45847212..45849516-chr11:45869124..45870868,2	K562	blood:
14	chr11:45867957..45870667-chr11:45891635..45895689,3	MCF-7	breast:
15	chr11:45867854..45870393-chr11:45906869..45909551,2	MCF-7	breast:
16	chr11:45854327..45856053-chr11:45869325..45871424,2	K562	blood:
17	chr11:45867823..45873583-chr11:45876186..45881298,10	MCF-7	breast:
18	chr11:45868914..45870628-chr11:45938803..45941080,3	MCF-7	breast:
19	chr11:45868118..45870705-chr11:45891795..45893685,3	K562	blood:
20	chr11:45868641..45870553-chr11:45905537..45909020,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000121680	Chromatin interaction
ENSG00000165905	Chromatin interaction
ENSG00000121671	Chromatin interaction
ENSG00000181830	Chromatin interaction
ENSG00000121653	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60988489	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949978	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45868400-45871200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr11:45868800-45870400	Active TSS	Pancreas	Pancrea
3	chr11:45869200-45870400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:45869400-45870400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr11:45869400-45870400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:45869400-45870400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
7	chr11:45869400-45870600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr11:45869600-45870400	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr11:45869600-45870400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:45869600-45870400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr11:45869600-45870400	Flanking Active TSS	Fetal Muscle Leg	muscle
12	chr11:45869600-45870400	Flanking Active TSS	Fetal Thymus	thymus
13	chr11:45869600-45870400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr11:45869600-45870600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr11:45869600-45870600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr11:45869600-45870600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:45869600-45870600	Flanking Active TSS	Fetal Stomach	stomach
18	chr11:45869600-45870600	Flanking Active TSS	K562	blood
19	chr11:45869600-45870800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:45869600-45870800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:45869600-45871000	Flanking Active TSS	Brain Substantia Nigra	brain
22	chr11:45869600-45871000	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr11:45869600-45871000	Flanking Active TSS	Dnd41	blood
24	chr11:45869600-45871200	Flanking Active TSS	Fetal Brain Female	brain
25	chr11:45869800-45870400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
26	chr11:45869800-45870400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr11:45869800-45870400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr11:45869800-45870400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
29	chr11:45869800-45870400	Flanking Active TSS	Fetal Intestine Large	intestine
30	chr11:45869800-45870400	Weak transcription	Gastric	stomach
31	chr11:45869800-45870400	Flanking Active TSS	HSMMtube	muscle
32	chr11:45869800-45870400	Flanking Active TSS	NH-A	brain
33	chr11:45869800-45870600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:45869800-45870600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:45869800-45870600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr11:45869800-45870600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr11:45869800-45870600	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr11:45869800-45870600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
39	chr11:45869800-45870600	Flanking Active TSS	Hela-S3	cervix
40	chr11:45869800-45870600	Flanking Active TSS	HMEC	breast
41	chr11:45869800-45870600	Flanking Active TSS	NHEK	skin
42	chr11:45869800-45870600	Flanking Active TSS	Osteobl	bone
43	chr11:45869800-45870800	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr11:45869800-45870800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
45	chr11:45869800-45870800	Flanking Active TSS	NHLF	lung
46	chr11:45869800-45871000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:45869800-45871000	Flanking Active TSS	Fetal Brain Male	brain
48	chr11:45869800-45871200	Enhancers	Small Intestine	intestine
49	chr11:45869800-45871200	Flanking Active TSS	Stomach Smooth Muscle	stomach
50	chr11:45869800-45871200	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links