Variant report

Variant	rs7108955
Chromosome Location	chr11:72746250-72746251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10793048	0.82[JPT][hapmap]
rs10898885	0.89[JPT][hapmap]
rs11235620	0.82[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs11822039	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs12294037	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12805658	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs12808517	0.90[CEU][hapmap]
rs2187494	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs3862796	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs4400839	0.81[CEU][hapmap]
rs4944016	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs593753	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6592500	0.91[CEU][hapmap]
rs6592505	0.90[CEU][hapmap];0.89[JPT][hapmap]
rs6592509	0.90[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs6592510	1.00[CEU][hapmap]
rs7946861	0.91[CEU][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv29369	chr11:72746247-72746250	Weak transcription Genic enhancers Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72722600-72746400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:72724400-72761000	Weak transcription	HSMM	muscle
3	chr11:72730800-72751000	Weak transcription	HSMMtube	muscle
4	chr11:72734200-72755200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:72736600-72750200	Weak transcription	Psoas Muscle	Psoas
6	chr11:72739200-72759200	Weak transcription	Aorta	Aorta
7	chr11:72739400-72748200	Weak transcription	Right Ventricle	heart
8	chr11:72739400-72748400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:72739400-72753000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:72739400-72765800	Weak transcription	Spleen	Spleen
11	chr11:72739600-72757800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:72739600-72759200	Weak transcription	Osteobl	bone
13	chr11:72740000-72748400	Weak transcription	HepG2	liver
14	chr11:72740000-72753200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:72740000-72757400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:72740000-72758400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:72740000-72758800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:72740000-72759200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:72740000-72771800	Weak transcription	Fetal Stomach	stomach
20	chr11:72740800-72749400	Weak transcription	Fetal Intestine Large	intestine
21	chr11:72740800-72750200	Weak transcription	Ovary	ovary
22	chr11:72740800-72751000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:72740800-72758400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:72741400-72746400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:72741400-72749400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr11:72741400-72749400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:72741400-72750200	Weak transcription	Lung	lung
28	chr11:72741400-72765000	Weak transcription	Fetal Heart	heart
29	chr11:72741600-72749400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:72741600-72749800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr11:72742000-72757800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:72743200-72746800	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr11:72743400-72746600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr11:72743400-72747200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr11:72743600-72747200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr11:72743800-72758800	Weak transcription	HUVEC	blood vessel
37	chr11:72744000-72750200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:72744200-72759200	Weak transcription	Pancreas	Pancrea
39	chr11:72744400-72746600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:72744400-72747600	Enhancers	Dnd41	blood
41	chr11:72744600-72758600	Weak transcription	Fetal Intestine Small	intestine
42	chr11:72745200-72746600	Genic enhancers	Primary B cells from peripheral blood	blood
43	chr11:72745200-72746600	Enhancers	Primary T cells fromperipheralblood	blood
44	chr11:72745200-72746600	Enhancers	Thymus	Thymus
45	chr11:72745200-72746800	Enhancers	Fetal Thymus	thymus
46	chr11:72745400-72746400	Enhancers	Liver	Liver
47	chr11:72745400-72746400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr11:72745400-72746600	Enhancers	Stomach Mucosa	stomach
49	chr11:72745600-72751200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:72745600-72761000	Weak transcription	Brain Cingulate Gyrus	brain

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