Variant report

Variant	rs7109196
Chromosome Location	chr11:113206464-113206465
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:113191850..113194427-chr11:113206060..113208826,2	K562	blood:
2	chr11:113205877..113209869-chr11:113210765..113213019,4	K562	blood:

Variant related genes	Relation type
ENSG00000149292	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10502173	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1055076	0.82[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs10891541	0.83[EUR][1000 genomes]
rs10891545	0.82[JPT][hapmap]
rs11214579	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs11214580	0.81[ASN][1000 genomes]
rs12224538	0.83[JPT][hapmap]
rs12225351	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12282356	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs12285457	0.92[EUR][1000 genomes]
rs12292113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12293753	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1893696	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1943622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276070	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2288159	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2298489	0.86[JPT][hapmap]
rs2303380	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs28712705	0.90[EUR][1000 genomes]
rs3781884	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs4590907	0.82[JPT][hapmap]
rs4938007	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4938010	0.91[EUR][1000 genomes]
rs4938011	0.91[EUR][1000 genomes]
rs4938014	0.82[JPT][hapmap]
rs4987094	0.85[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs60373142	0.84[ASN][1000 genomes]
rs635358	0.81[ASN][1000 genomes]
rs6589372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6589373	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7114433	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7130431	0.82[JPT][hapmap]
rs713233	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs719803	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7928201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7928978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931066	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7949242	0.93[EUR][1000 genomes]
rs948176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs948177	0.82[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7109196	TTC12	Cis_1M	lymphoblastoid	RTeQTL
rs7109196	TTC12	cis	multi-tissue	Pritchard

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:113186000-113210000	Weak transcription	Thymus	Thymus
2	chr11:113186000-113214200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:113186200-113209600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:113186200-113209600	Weak transcription	Colonic Mucosa	Colon
5	chr11:113186200-113210000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:113186200-113210400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:113186200-113212200	Weak transcription	NHLF	lung
8	chr11:113186200-113216800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:113186600-113210000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:113186600-113212200	Weak transcription	K562	blood
11	chr11:113186600-113226400	Weak transcription	Primary T cells from cord blood	blood
12	chr11:113186800-113207200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:113186800-113213000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:113186800-113225000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:113186800-113234200	Weak transcription	Fetal Thymus	thymus
16	chr11:113187000-113217200	Weak transcription	HepG2	liver
17	chr11:113187800-113210200	Weak transcription	Fetal Kidney	kidney
18	chr11:113188600-113210000	Weak transcription	A549	lung
19	chr11:113191600-113210200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:113191600-113212200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr11:113191600-113226800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:113193200-113206800	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr11:113193400-113215600	Strong transcription	Adipose Nuclei	Adipose
24	chr11:113193400-113216400	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:113193600-113207200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:113193800-113215400	Strong transcription	Primary B cells from peripheral blood	blood
27	chr11:113193800-113215600	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr11:113194000-113206600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr11:113194000-113206600	Strong transcription	Stomach Smooth Muscle	stomach
30	chr11:113194000-113207400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:113194000-113214800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:113194000-113217000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:113194400-113208200	Strong transcription	Liver	Liver
34	chr11:113195600-113240600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:113196200-113210200	Weak transcription	Fetal Heart	heart
36	chr11:113196400-113210000	Weak transcription	Osteobl	bone
37	chr11:113197600-113207000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:113198400-113207400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:113198400-113213200	Strong transcription	HMEC	breast
40	chr11:113199600-113208200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr11:113200800-113207200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:113201000-113209400	Weak transcription	Right Ventricle	heart
43	chr11:113201000-113210400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr11:113201000-113212200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr11:113201000-113214200	Weak transcription	HSMMtube	muscle
46	chr11:113201200-113227800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:113201800-113207000	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:113202200-113207200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:113202400-113209600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:113202400-113210200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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